Planemo

Latest version: v0.75.23

Safety actively analyzes 630052 Python packages for vulnerabilities to keep your Python projects secure.

Scan your dependencies

Page 9 of 24

0.57.1

---------------------

* Fix username validation for shed linting (thanks to `martenson`_).
`Pull Request 899`_, `Issue 898`_

---------------------

0.57.0

---------------------

* Allow ``workflow_convert`` to convert a native ``.ga`` workflows to format 2 (yaml).
`Pull Request 896`_
* New command (``workflow_edit``) to open workflow in a synchronized graphical editor.
`Pull Request 894`_
* Conda tutorial fixes (thanks to `nsoranzo`_). `Pull Request 876`_
* Enable ``--conda_use_local`` option for ``planemo test`` (thanks to
`nsoranzo`_). `Pull Request 876`_
* When testing, skip workflow outputs that do not have a `label` set (thanks to
`bgruening`_). `Pull Request 893`_
* Add ``__repr__`` for ``TestCase`` to improve debugging Planemo
(thanks to `bgruening`_). `Pull Request 892`_
* Increase IO polling interval over time (thanks to `martenson`_).
`Pull Request 891`_
* Sync galaxy xsd and fix tests (thanks to `mvdbeek`_).
`Pull Request 889`_
* Linting fix for ``W605`` (thanks to `martenson`_). `Pull Request 888`_
* Add icon for repeat parameters in training (thanks to `bebatut`_).
`Pull Request 887`_

---------------------

0.56.0

---------------------

* Allow selection of Python version when starting managed Galaxy
(thanks to `mvdbeek`_). `Pull Request 874`_
* Change the channel priority of conda (again). (thanks to `bgruening`_).
`Pull Request 867`_
* Some small english corrections (thanks to `hexylena`_). `Pull Request 868`_
* Print the list of excluded paths when running ``ci_find_repos``
(thanks to `nsoranzo`_). `Pull Request 877`_
* Improved XSD lint reporting. `Pull Request 871`_
* Fix Planemo writing a file called ``gx_venv_None``. `Pull Request 870`_
* Update cwltool and galaxy-lib dependencies for Python 3.7 (thanks to
`nsoranzo`_). `Pull Request 864`_
* Fix to make workflow testing more robust.
`Pull Request 882`_

---------------------

0.55.0

---------------------

* Add commands to create Galaxy training materials (thanks to `bebatut`_).
`Pull Request 861`_
* Fix `planemo test` when TEMP env variable contain spaces (thanks to
`nsoranzo`_).
`Pull Request 851`_
* Support testing a completely remote galaxy instance (thanks to `hexylena`_).
`Pull Request 856`_
* Allow naming history from command line (thanks to `hexylena`_).
`Pull Request 860`_
* Sync galaxy.xsd from galaxy repo (thanks to `nsoranzo`_).
`Pull Request 866`_
* Fix ServeTestCase.test_shed_serve test (thanks to `nsoranzo`). bad810a_

---------------------

0.54.0

---------------------

* Better support for testings against different versions of Galaxy efficiently and robustly.
`Pull Request 849`_
* New database version (thanks to `bgruening`_).
`Pull Request 847`_
* Hyperlink DOIs against preferred resolver (thanks to `katrinleinweber`_).
`Pull Request 850`_
* Tests for collection inputs to workflows. `Pull Request 843`_
* Bring in Ephemeris sleep function - hopefully makes serve tests a bit more robust.
b12b117_
* More tutorial testing, tutorial updates.
016b923_, 324c776_, 2002b49_
* More isolated ``test_shed_upload.py`` tests. 72d2ca7_
* Add filetype support for workflow test inputs (thanks to `bgruening`_).
`Pull Request 842`_
* Add ``--no_shed_install`` option, to prevent shed installs as part of workflow testing.
`Pull Request 841`_
* Small docs fix (thanks to `hexylena`_). `Pull Request 848`_

---------------------

0.53.0

---------------------

* Make Planemo testing easier for CWL tools and workflows in various ways and update
tutorials to reflect these simplifications. `Pull Request 837`_
* Test and fix running workflow tests against externally managed Galaxy servers.
`Pull Request 833`_, `Pull Request 836`_
* Allow using URIs for inputs of workflow test. `Pull Request 840`_
* Slide Galaxy testing window to include 18.05 and drop 17.09. `Pull Request 838`_

---------------------

Page 9 of 24

© 2024 Safety CLI Cybersecurity Inc. All Rights Reserved.