Planemo

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* Fix project_init for missing files. cb5b906_
* Various documentation improvements.

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* Fix for ``shed_init`` producing non-standard type hints. `Issue 243`_,
f0610d7_
* Fix tool linting for parameters that define an ``argument`` but not a
``name``. `Issue 245`_, aad1eed_
* Many doc updates including a tutorial for developing tools in a test-driven
fashion and instructions for using the planemo appliance through Kitematic
(with Kitematic screenshots from E. Rasche).

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* If planemo cannot find a Galaxy root, it will now automatically fetch
one (specifing ``--galaxy_install`` will still force a fetch).
`Pull Request 235`_
* `Docuementation <http://planemo.readthedocs.org/en/latest/appliance.html>`__
has been updated to reflect new and vastly improved Docker and Vagrant
virtual appliances are now available, as well as a new VirtualBox OVA
variant.
* Update linting for new tool XML features (including ``detect_errors``
and output collections). `Issue 233`_, 334f2d4_
* Fix ``shed_test`` help text. `Issue 223`_
* Fix code typo (thanks to Nicola Soranzo). `Pull Request 230`_
* Improvements to algorithm used to guess if an XML file is a tool XML file.
`Issue 231`_
* Fix configuration file handling bug. `Issue 240`_

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* Fix ``shed_test`` and ``shed_serve`` for test and local tool sheds.
f3cafaa_

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* Fix to ensure the tab completion script is in the Python source tarball
(required for setting up tab-completion for Homebrew). 6b4e7a6_

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* Implement a ``--failed`` flag for the ``test`` command to rerun
previously faied tests. `Pull Request 210`_
* Implement ``shed_update`` to upload contents and update repository
metadata. `Pull Request 216`_
* Implement ``shed_test`` and ``shed_serve`` commands to test and view
published artifacts in the Tool Shed. `Pull Request 213`_, `Issue 176`_
* Add shell tab-completion script. 37dcc07_
* Many more commands allow specifing multiple tool and/or repository targets.
`Issue 150`_
* Add -m as alias for --message in planemo shed_upload (thanks to
Peter Cock). `Pull Request 200`_
* Add ``--ensure_metadata`` option to ``shed_lint`` to ensure ``.shed.yml``
files contain many repository. `Pull Request 215`_
* More developer documentation, additional ``make`` targets including ones
for setting up git pre-commit hooks. cc8abb6_, `Issue 209`_
* Small README improvement (thanks to Martin Čech) b53006d_
* Fixes for shed operation error handling (thanks to Martin Čech).
`Pull Request 203`_, `Pull Request 206`_
* Fix for "smart" ``shed_diff`` not in the repository root directory
(thanks to Peter Cock). `Pull Request 207`_, `Issue 205`_
* Recursive ``shed_diff`` with directories not yet in Tool Shed.
`Pull Request 208`_
* Improve error handling and reporting for problematic ``--shed_target``
values. `Issue 217`_
* Fix typos in lint messages. `Issue 211`_


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