Planemo

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* Improved handling of Python 2.7 specific dependencies.

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* Look for sha256sum checksums during shed_lint (thanks to `peterjc`_).
`Pull Request 539`_
* An assortment fixes and enhancements to the ``dependency_script`` command
(thanks to `peterjc`_). `Pull Request 541`_, `Pull Request 545`_
* Fix shed_build to respect exclude: in .shed.yml (thanks to `nsoranzo`_).
`Pull Request 540`_
* Fix linting of tool URLs (thanks to `nsoranzo`_). `Pull Request 546`_

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* Fixes for bioblend_ v0.8.0 (thanks to `nsoranzo`_). 9fdf490_
* Enable shed repo type update (thanks to `nsoranzo`_). 3ceaa40_
* Create suite repositories with repository_suite_definition type by default
(thanks to `nsoranzo`_).
057f4f0_
* Include ``shed_lint`` in script run by ``travis_init`` (thanks to `peterjc`_).
`Pull Request 528`_
* Minor polish to the ``travis_init`` command (thanks to `peterjc`_).
`Pull Request 512`_
* Update pip_ and setuptools on TravisCI; fix travis_init (thanks to `peterjc`_).
`Pull Request 521`_
* Shorten command one line descriptions for main help (thanks to `peterjc`_).
`Pull Request 510`_
* Use ``planemo test --no_cache_galaxy`` under TravisCI (thanks to `peterjc`_).
`Pull Request 513`_
* Improve and fix docs ahead of GCC 2016 (thanks to `martenson`_).
`Pull Request 498`_, 725b232_
* Add description of ``expect_num_outputs`` to planemo FAQ. a066afb_
* Revise planemo tools docs to be more explicit about collection identifiers.
a811e65_
* Add more docs on existing dynamic tool output features. `Pull Request 526`_
* Fix serve command doc (thanks to `nsoranzo`_). 8c088c6_
* Fix `make lint-readme` (RST link errors) (thanks to `peterjc`_).
`Pull Request 525`_
* Add union bedgraph example to project templates (for GCC demo example).
d53bcd6_
* Add Flow Cytometry Analysis, Data Export, and Constructive Solid Geometry as
shed categories (thanks to `bgruening`_, `gregvonkuster`_, and `nsoranzo`_).
e890ab5_, 08bb354_, e2398fb_
* Remove duplicated attribute in docs/writing/bwa-mem_v5.xml (thanks to
Paul Stewart `pstew`_).
`Pull Request 507`_

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* Use ephemeris to handle syncing shed tools for workflow actions.
1c6cfbb_
* More planemo testing enhancements for testing artifacts that aren't
Galaxy tools. `Pull Request 491`_
* Implement ``docker_galaxy`` engine type. eb039c0_, `Issue 15`_
* Enhance profiles to be Dockerized Galaxy-aware. `Pull Request 488`_
* Add linter for DOI type citation - thanks to `mvdbeek`_.
`Pull Request 484`_

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* Implement ``Engine`` and ``Runnable`` abstractions - Planemo now has
beta support for testing Galaxy workflows and CWL_ tools with Galaxy and
any CWL_ artifact with cwltool_.
`Pull Request 454`_, 7be1bf5_
* Fix missing command_line in test output json. e38c436_
* More explicit Galaxy ``job_conf.xml`` handling, fixes bugs caused by
``galaxy_root`` having existing and incompatible ``job_conf.xml`` files
and makes it possible to specify defaults with fixed server name. c4dfd55_
* Introduce profile commands (``profile_create``, ``profile_delete``, and
``profile_list``) and profile improvements (automatic postgres database
creation support). `Pull Request 480`_, a87899b_
* Rework Galaxy test reporting to use structured data instead of XUnit
data. 4d29bf1_
* Refactor Galaxy configuration toward support for running Galaxy in
docker-galaxy-stable. `Pull Request 479`_

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* Tweak dependencies to try to fix cwltool_ related issues - such
as `Issue 475`_.

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