Planemo

Latest version: v0.75.23

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0.52.0

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* Allow optional disabling of Galaxy single user mode. `Pull Request 835`_
* Fix for path pasting options during workflow testing. `Pull Request 834`_

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0.51.0

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* Fix essentially all Conda_ and BioContainers_ related functionality to allow parity between
CWL_ and existing Galaxy functionality - fixes and enhances many commands including ``lint``,
``conda_install``, ``conda_env``, ``test``, ``run``, and ``mull``.
`Pull Request 828`_
* Add two new tutorials for `Conda
<http://planemo.readthedocs.io/en/latest/writing_advanced_cwl.html#dependencies-and-conda>`__
and `Container
<http://planemo.readthedocs.io/en/latest/writing_advanced_cwl.html#dependencies-and-containers>`__
development with CWL tools that mirrors the existing tutorials for Galaxy tools - including new
CWL exercises, answers, and example project templates.
347c622_
* Improve the CWL generated by the ``tool_init`` command to properly deal with
``SoftwareRequirement`` s and generate more idiomatic CWL.
`Pull Request 820`_, a5c72e3_
* Add new engine type (``--engine toil``) for testing and running CWL_ tools (requires
manually installing Toil_ with ``pip install toil`` in Planemo's environment).
`Pull Request 831`_
* Add `documentation <http://planemo.readthedocs.io/en/latest/test_format.html>`__
for the Galaxy Workflow and CWL_ test format files (includes information on configuring
various test engines).
`Pull Request 832`_
* Better default logging config for CWL development. `Pull Request 830`_
* Various fixes for the ``conda_search`` command. `Pull Request 826`_
* Fix test coverage configuration. `Pull Request 822`_
* Reorganize .travis.yml for clarity. `Pull Request 829`_
* More isolated, robust unit tests that use git_.
`Pull Request 827`_, `Pull Request 818`_
* Fix default list of best-practice Conda channels. `Pull Request 825`_
* Refactor tests to speed up quick tests - fewer buggy URLs fetched in "quick" mode.
`Pull Request 823`_
* Fix upload configuration of workflow testing to default (overrideable) external Galaxies
to not use path pasting.
`Pull Request 816`_
* Fix test number parsing for workflow tests. `Pull Request 817`_

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0.50.1

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* Fix the process of waiting on Galaxy to boot up for the Docker Galaxy container ``--engine``.

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0.50.0

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* Fixes and small CLI tweaks to get the Docker Galaxy container working as an ``--engine`` for the
run, serve, and test commands.

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0.49.2

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* Various small fixes for new external Galaxy engine type.

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0.49.1

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* Fix PyPI_ README rendering for 0.49.0 release changes.

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