Planemo

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* Fixed problem with PyPI_ build artifacts due to submodule's not
being initialized during previous release.

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* Add ``--skip_venv`` to support running Galaxy 16.01 inside of
conda environments. 9f3957d_
* Implement conda support. f99f6c1_, ad3b2f0_, 5e0b6d1_
* Update LICENSE for Planemo to match Galaxy. 15d33c7_
* Depend on new `galaxy-lib`_ on PyPI_ instead of previous hacks....
`Pull Request 394`_
* Fix egg caching against master/15.10. 6d0f502_
* Fix bug causing shed publishing of ``.svn`` directories.
`Issue 391`_
* Bug fixes for Conda_ support thanks to `bgruening`_. 63e456c_
* Fix document issues thanks to `einon`_.
`Pull Request 390`_
* Improve client for shed publishing to support newer shed backend
being developed by `hexylena`_. `Pull Request 394`_
* Tool Shed ``repo_id`` change, `hexylena`_. `Pull Request 398`_
* Various other small changes to testing, project structure, and
Python 3 support.

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* Fix serious regression to ``test`` command. 94097c7_
* Small fixes to release process. 4e1377c_, 94645ed_

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* If ``virtualenv`` not on ``PATH``, have Planemo create one for Galaxy.
5b97f2e_
* Add documentation section on testing tools installed in an existing
Galaxy instance. 1927168_
* When creating a virtualenv for Galaxy, prefer Python 2.7.
e0577e7_
* Documentation fixes and improvements thanks to `martenson`_.
0f8cb10_, 01584c5_, b757791_
* Specify a minimum ``six`` version requirement. 1c7ee5b_
* Add script to test a planemo as a wheel. 6514ff5_, `Issue 184`_
* Fix empty macro loading. `Issue 362`_
* Fix an issue when you run ``shed_diff --shed_target local`` thanks
to Gwendoline Andres and Gildas Le Corguillé at ABiMS Roscoff.
`Pull Request 375`_
* Fix ``shed_diff`` printing to stdout if ``-o`` isn't specified.
f3394e7_
* Small ``shed_diff`` improvements to XML diffing and XUnit reporting.
af7448c_, 83e227a_
* More logging of ``shed_diff`` results if ``--verbose`` flagged.
9427b47_
* Add ``test_report`` command for rebuilding reports from structured JSON.
99ee51a_
* Fix option bug with Click 6.0 thanks to `bgruening`_. 2a7c792_
* Improved error messages for test commands. fdce74c_
* Various fixes for Python 3. 2f66fc3_, 7572e99_, 8eda729_, 764ce01_
* Use newer travis container infrastructure for testing. 6d81a94_
* Test case fixes. 98fdc8c_, 0e4f70a_

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* More complete I/O capturing for XUnit. 6409449_
* Check for select parameter without options when linting tools.
`Issue 373`_
* Add ``--cwl_engine`` argument to ``cwl_run`` command. dd94ddc_
* Fixes for select parameter linting. 8b31850_
* Fix to demultiplexing repositories after tool uploads. `Issue 361`_
* Fix to update planemo for Galaxy wheels. 25ef0d5_
* Various fixes for Python 2.6 and Python 3.
c1713d2_, 916f610_, c444855_

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* Initial implementation of ``cwl_run`` command that runs a
CWL tool and job file through Galaxy. 49c5c1e_
* Add ``--cwl`` flag to ``serve`` to experimentally serve CWL tools
in Galaxy.
`Pull Request 339`_
* Implement highly experimental ``cwl_script`` command to convert
a CWL job to a bash script. 508dce7_
* Add name to all XUnit reports (thanks to `hexylena`_).
`Pull Request 343`_
* Capture stdout and stderr for ``shed_diff`` and ``shed_update``
XUnit reports. `Pull Request 344`_
* More tool linting (conditionals) thanks to `hexylena`_.
`Pull Request 350`_
* UTF-8 fixes when handling XUnit reports. `Pull Request 345`_
* Add `Epigenetics` as Tool Shed category. `Pull Request 351`_
* Merge changes to common modules shared between Galaxy, Planemo, and Pulsar (thanks to `natefoo`_).
`Pull Request 356`_
* Add ``--cite_url`` to ``tool_init``. fdb1b51_
* ``tool_init`` bug fix. f854138_
* Fix `setup.py`_ for cwltool and bioblend_ changes. 1a157d4_
* Add option to specify template sqlite database locally. c23569f_
* Add example IPython notebooks to docs. c8640b6_

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