Planemo

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* Removing broken link, update it to current doc (thanks to `profgiuseppe`_).
`Pull Request 1244`_
* Implement nested collection inputs and outputs in workflow_test_init `Pull
Request 1242`_
* More fixes for auto-generating workflow tests `Pull Request 1241`_
* Fix workflow_test_init for collection outputs `Pull Request 1239`_

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* Allow specifying URL and API key with workflow autoupdate and docs
improvements (thanks to `simonbray`_). `Pull Request 1237`_
* Pin planemo to last known working major galaxy version `Pull Request 1230`_
* Drop unused Python dependencies and upgrade syntax to Python 3.6 `Pull Request 1228`_
* Update `best_practice_search()` for changes in galaxy-tool-util `Pull Request 1224`_
* Make galaxy config `cleanup_job` depend on `--no_cleanup`
(thanks to `bernt-matthias`_). `Pull Request 1226`_
* Tool builder: add profile and suffix version
(thanks to `gallardoalba`_). `Pull Request 1222`_
* training-init: add the FAQ index page to tutorial folder
(thanks to `shiltemann`_). `Pull Request 1217`_
* Adding best practices and assertion checks to workflow_lint
(thanks to `simonbray`_). `Pull Request 1213`_
* Updates to workflow autoupdate required for IWC bot
(thanks to `simonbray`_). `Pull Request 1214`_
* Add test and fix for failing docker_galaxy engine
(thanks to `simonbray`_). `Pull Request 1215`_
* Generate workflow test from invocation id
(thanks to `simonbray`_). `Pull Request 1209`_
* Fixed minor typo in documentation
(thanks to `stain`_). `Pull Request 1206`_
* Add missing ToolShed categories `Pull Request 1207`_
* Use WorkflowId rather than StoredWorkflowId when autoupdating subworkflows
(thanks to `simonbray`_). `Pull Request 1205`_
* Always use random id_secret for testing (thanks to `bernt-matthias`_). `Pull Request 1198`_
* Add rerun subcommand for rerunning jobs (thanks to `simonbray`_). `Pull Request 1140`_

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* Fix rendering of subworkflow steps for workflow testing report (thanks to
`simonbray`_). `Pull Request 1200`_
* Replace Galaxy interactor galaxy_requests_post with make_post_request from
BioBlend (thanks to `simonbray`_). `Pull Request 1201`_

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* Exclude click 8.0.2. `Pull Request 1196`_
* Add tool version numbers to autoupdate logging (thanks to `simonbray`_).
`Pull Request 1188`_
* Allow tool autoupdate without conda installation (thanks to `simonbray`_).
`Pull Request 1193`_
* use correct key execution_problem in template (thanks to `bernt-matthias`_).
`Pull Request 1195`_

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* Fix documentation to include ``--download_outputs`` flag (thanks to
`simonbray`_). `Pull Request 1184`_
* Select refgenie config based on Galaxy version `Pull Request 1187`_
* Extend autoupdate subcommand to workflows (thanks to `simonbray`_). `Pull
Request 1151`_

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* Add JSON report for planemo run invocations (thanks to `simonbray`_). `Pull
Request 1153`_
* Ignore failure to download output datasets `Pull Request 1179`_
* Allow location to point to url for outputs `Pull Request 1180`_
* Fix --shed_install for gxformat2 workflows `Pull Request 1182`_

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