Planemo

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* Implement external Galaxy engine. `Pull Request 781`_
* Restructure serve testing code for reuse. `Pull Request 795`_
* Improve test report handling for JSON generated via galaxy-lib testing
script. `Pull Request 799`_
* Improve how various branches of Galaxy are tested. `Pull Request 800`_
* Added documentation for ``GALAXY_MEMORY_MB`` (thanks to `bernt-matthias`_).
`Pull Request 801`_
* Log tool config in verbose logging mode. `Pull Request 802`_
* Replace ``r`` channel with ``conda-forge`` (thanks to `bgruening`_).
`Pull Request 805`_
* Sync ``galaxy.xsd`` with latest Galaxy updates (thanks to `nsoranzo`_).
`Pull Request 806`_
* Use ``requests.get()`` when validating http URLs (thanks to `nsoranzo`_).
`Pull Request 809`_
* Do not consider tools with "deprecated" in the path (thanks to
`bgruening`_). `Pull Request 810`_
* Automatically load tools shipped with Galaxy when testing, running, or serving
workflows that reference these tools. `Pull Request 790`_
* Revise README and touch up documentation in general. `Pull Request 787`_
* Various small changes to testing and test framework. `Pull Request 792`_
* Various Python 3 fixes. 8cfe9e9_, 41f7df1_
* Fixes for Galaxy 18.0X releases.
`Pull Request 803`_, dc443d6_

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* Run all CI tests against Python 3 (thanks to `nsoranzo`_).
`Pull Request 768`_ and `Pull Request 774`_
* Python 3 fix - subprocess with ``universal_newlines=True``
(thanks to `peterjc`_).
`Pull Request 764`_
* Record CWL_ conformance test results using JUnit xml
(thanks to `mr-c`_).
`Pull Request 756`_
* Restore run test case for simple Galaxy tools.
`Pull Request 769`_
* Enhancements to Galaxy profiles and workflow testing.
`Pull Request 773`_
* Fix resolving & installing shed repositories from workflows for ``test``
and ``run`` commands.
`Pull Request 776`_
* Implement planemo command to convert format 2 workflows into .ga workflows.
`Pull Request 771`_
* Add a native Galaxy workflow (.ga) testing test.
`Pull Request 770`_
* Drop Brew support but add more detailed install instructions.
`Pull Request 761`_
* Clean up CWL_ conformance test execution. `Pull Request 753`_
* Assorted small CWL_ and deamon serve fixes. `Pull Request 759`_


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* Update to the latest Galaxy tool XSD (thanks to `nsoranzo`_).
`Pull Request 747`_
* Re-fix problem when shed_update would fail if nothing to update
(thanks to `nsoranzo`_). `Pull Request 747`_
* Update instructions for installation via conda (thanks to `nsoranzo`_) .
`Pull Request 743`_
* Bug fix for MacOS `chmod` doesn't support `--recursive` flag.
(thanks to `dfornika`_). `Pull Request 739`_
* Bug fix to also `socket.error` when linting URLs
(thanks to `nsoranzo`_). `Pull Request 738`_
* Disable broken tests. `Pull Request 745`_

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* Rev to latest versions of bioblend_ and `galaxy-lib`_ for various fixes
related to CWL_.

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* Change behavior of ``--docker`` flag, for a few releases it would require
Galaxy use a container for every non-upload tool. This breaks various
conversion tools for instance and so was reverted.
`Pull Request 733`_
* Add 'Accept' header when linting doc URLs (thanks to `nsoranzo`_).
`Pull Request 725`_
* Fix `--conda_auto_install` help (thanks to `nsoranzo`_).
`Pull Request 727`_
* Incremental progress toward CWL support via Galaxy.
`Pull Request 729`_, `Pull Request 732`_
* Update galaxy-lib to latest version to fix various issues.
`Pull Request 730`_
* Fix lint detected problems with documentation.
`Pull Request 731`_

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* Update to the latest `galaxy-lib`_ for Conda fixes. (thanks `nsoranzo`_)
and updated CWL_ utilities. `Pull Request 716`_, `Pull Request 723`_
* Update Conda_ channel order to sync with Bioconda_
(thanks to `nsoranzo`_). `Pull Request 715`_
* Experimental support running CWL_ workflows through the CWL_ fork of Galaxy.
* Mention ``planemo command --help`` in main help
(thanks to `peterjc`_). `Pull Request 709`_
* Bugfix handle ``None`` requirement versions when registering containers
(thanks to `bgruening`_). `Pull Request 704`_
* Bugfix for dependencies by pinning ruamel.yaml version
(thanks to `mvdbeek`_). `Pull Request 720`_

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