- `Gene_statistics.py` now working - Fixed critical bug of allele_B = allele_b in the linkage table.
0.3.0
- Now calculates D', and normalized versions of D' and R2 - min_snp is now - Has the new gene_statistics.py and combine_samples.py scripts
0.2.8
- fixed varbase = refbase error when there's a tie for most abundant variant - made default output prefix be the fasta file prefix - now generate scafold counts numpy array which show total variant counts for all positions by scaffold
0.2.7
Changed - Change to how scaff2pair2info is handled
0.2.6
Changed - Minor change to the pickle protocol and stuff
0.2.5
Changed - Allow changing filtering criteria, and some basic testing to make sure it works - Will convert .sams to .bams and index for you