Instrain

- Change "percent_compared" to "percent_genome_compared"
- Add junk to genomeUtilities and plottingUtilities

- Change the name "considered_bases" to "percent_compared" in readComparer

- ReadComparer now works with v0.6 IS objects

- Note: Im making this a new minor version more because I should have made the last one a minor version that that this deserves to be one
- Give SNVprofile the ability to only load some scaffolds
- Add readComparer ability to only select certain scaffolds
- Make readComparer do the better form of multiprocessing
- Actually a lot of readComparer changes

- NOTE: THIS UPDATE DOES SEEM TO INCREASE RAM SPIKES (probably related to shrinking), BUT DECREASES RAM USAGE OVERALL
- Add increased logging to read filtering
- Remove non-zero values from base-wise stored things
- Fix getting clonalities from clonT dataframe (need to sort by mm first)
- Remove the need to get clonalities from clonT dataframe during initial profile
- Add some more attempted logging and saving of failed scaffolds

- Add an awk filter to quickProfile