Instrain

Latest version: v1.9.0

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0.4.4

Added
- Added the argument "min_scaffold_reads"

0.4.3

Added
- Debug option
- A bunch of un-usable code and tests related to readComparer. Need to continue work on it

Changed
- pileup_counts is now a "store_everything" attribute and not stored by default

0.4.2

Changed
- Big changes to the SNV table
- Logs "morphia"; the number of bases reaching the above criteria
- Included bases with 1 morphia when its different from the reference base
- Include the reference base at that position

0.4.1

Fixed
- gene_statistics works more natively with the new SNVprofile

0.4.0

Changed
- SNV profile is totally different now. Pretty sweet

0.3.2

Changed
- gene_statistics now doesn't look for partial genes
- gene_statistics now actually saves as the file name you want it to
- reorganized everything

Added
- expected breadth on the scaffold level

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