Drep

Fixed
- test_suite now works
- removed unnecessary import

Changed
- output of all external commands is now stored in the log directory
- all external commands are now run through the same method

Fixed
- mash should now work on larger argument lists

Fixed
- filtering with regards to strain heterogeneity fixed

Changed
- Logging now logs mummer commands run with ANIn option

Added
- Choose can now function without checkM

fixed
- Scoring with regards to strain heterogeneity modified

fixed
- N50 calculation is now correct