Fixed
- prodigal now multithreads the correct amount
- compare_wf double-printing issue
- --SkipMash now works
Changed
- default checkM method is now lineage_wf in dereplicate_wf, filter, and choose
- pyenv now reverences non-anaconda in the documentation and error messages
- default min length in now 50,000
Added
- more thorough testing (though still not nearly enough)
- log now contains the exact command run