Dark-matter

Latest version: v4.0.81

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Page 35 of 43

Not secure

Added hard-clipping to CIGAR in SAM created by `convert-diamond-to-sam.py`.

Not secure

Use `from six import StringIO` to avoid a PY2/3 incompatibility.

Not secure

Added `bin/convert-diamond-to-sam.py` script to convert DIAMOND output
format 6 to SAM.

Not secure

Added `btop2cigar` to `dark.btop` to convert BTOP strings to CIGAR strings.

Fixed `flake8` warnings about single backslashes in strings.

Make `fasta-diff.sh` use GNU parallel, if installed.

Has known vulnerabilities

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