Added `--maxORFLength` option to `extract-ORFs.py`. Fixed logic in retrospect.
3.0.57
Not secure
Added `--removeIds` option to `fasta-diff.sh` (and its helper script `fasta-join.py`).
3.0.56
Not secure
Make `convert-diamond-to-sam.py` print the correct (nucleotide) offset of the start of the match, as though its subject sequence had been nucleotides.
3.0.55
Not secure
Make `convert-diamond-to-sam.py` print the list of required fields in case an input line cannot be split into the expected number of fields.
3.0.54
Not secure
`convert-diamond-to-sam.py` was putting the incorrect (AA, not nucleotide) reference length into the SAM output. Introduced some spaces for easier table layout into the HTML generated by `fasta-identity-table.py` when called by `compare-consensuses.py`.
3.0.53
Not secure
Fixed [650](https://github.com/acorg/dark-matter/issues/650), exception in `SAMFilter` when quality is `*` in a SAM file.