Removed bone-headed use of full path to `fasta-join.sh` from `bin/fasta-diff.sh`.
3.0.63
Not secure
Added `compareAaReads` and `matchToString` to `aa.py`. Wrote tests in `test_aa.py` for both. Moved `countPrint` to utils, used by `matchToString` in `dna.py` and `aa.py`. Added `compare-aa-sequences.py` to the bin.
3.0.62
Not secure
Added `matchToString` to `dna.py` to allow printing of a DNA match.
3.0.61
Not secure
Added `--reverse` and `--reverseComplement` options to `filter-fasta.py` and the underlying `ReadFilter` class.
3.0.60
Not secure
In `reads.py`, changed the `_makeComplementTable` function so that uppercase and lowercase bases are correctly reverse complemented into their respective uppercase and lowercase complementary letters. Added a test to `test/reads.py` to confirm that `reverseComplement` does this.
3.0.59
Not secure
Added `--sampleName` option to `proteins-to-pathogens`.