Added read count color levels indicator in HTML. Added `--bootstrapTreeviewDir` to `proteins-to-pathogens-civ.py` and the `toHTML` method of `dark.civ.proteins.ProteinGrouper`.
3.1.18
Not secure
Fix (again) newline in HTML summary output.
3.1.17
Not secure
Fix newline in HTML summary output.
3.1.16
Not secure
Fix tiny bug in print arguments in `dark/civ/proteins.py`.
3.1.15
Not secure
Added `--readCountColor` and `--defaultReadCountColor` to `proteins-to-pathogens-civ.py` for differential coloring of read counts. Added `citrus yellow` to plant-only virus name regex in `dark/taxonomy.py`.
3.1.14
Not secure
Added a const value for `--pathogenPanelFilename` in `proteins-to-pathogens-civ.py`.