Pass the reference id to the `idLambda` function in `make-consensus.py`.
3.1.50
Not secure
Moved `tempdir` assignment in `make-consensus.py` out one level so that it happens including when we are given a VCF file.
3.1.49
Not secure
Wrapped reads saving in a `Reads()` instance in `compare-sequences.py`.
3.1.48
Not secure
Unreleased.
3.1.47
Added `--sampleName` and `--readGroup` options to `Bowtie2.align`. Added `--id` and `--idLambda` options to `make-consensus.py` to make it possible to set (or adjust) the name of the generated consensus.
3.1.46
Not secure
Trivial change to setting of `tempdir` in `run-bowtie2.py`.