Added `--sample-ploidy 1` to halpotype calling in `bowtie2.py`.
3.1.74
Not secure
Improved `aa-info.py` to also match on partial full names. Improved taxonomic detection of plant-only viruses.
3.1.73
Not secure
Added `count` variable to `format-fasta.py` and a `--start` option to set its starting value.
3.1.72
Not secure
Added `format-fasta.py` script. Reverted unecessary hacks to `fasta-sequences.py` to print MD5 sums, etc.
3.1.71
Not secure
Added `--md5OneLine` argument to `fasta-sequences.py`. Prints TAB-separated MD5 (sequence) sum, then the read id, then the sequence (and quality, if any).
3.1.70
Not secure
Added `--maxNFraction` argument to `filter-fasta.py`.