Added `--noFilter` option to `sam-coverage.py` and `sam-coverage-depth.py` to allow them to run faster when no special filtering is needed.
3.1.78
Added `--callHaplotypesGATK` to `bin-make-consensys.py`.
3.1.77
Added code to combine multiple sequences (see `bin/combine-sequences.py`).
3.1.76
Not secure
Changed `--maskNoCoverage` to `--maskLowCoverage` in `make-consensus.py` and have it take an argument of the minimum coverage at which to call the consensus.