Added a simple consensus caller. Still needs to be stress tested in the wild, and will need more tests and code refactoring to make it more broadly useful.
4.0.14
Added internal optimization to make the SAM filtering fast when no filtering is needed (this is the merge of a pull request from July 2021).
4.0.13
Not secure
Added `bin/fasta-count-chars.py` script. Fixed argument bug in `run-bowtie2.py` print statement.
4.0.12
Not secure
Fixed another tiny bug when printing dry run output in `bin/make-consensus.py`.
4.0.11
Not secure
Fixed tiny bug when printing dry run output in `bin/make-consensus.py`.
4.0.10
Updated TravisCI config and README build status badge URL.