Safety CI > msk-access/uncollapsed_bam

pyup-scheduled-update-2024-12-01

5 months ago

Update pytest from 7.2.0 to 8.3.4

setuptools 65.4.1 and pytest-runner 6.0.1 have known security vulnerabilities.

Package	Installed	Affected	Info
setuptools	65.4.1	<70.0.0	show Affected versions of Setuptools allow for remote code execution via its download functions. These functions, which are used to download packages from URLs provided by users or retrieved from package index servers, are susceptible to code injection. If these functions are exposed to user-controlled inputs, such as package URLs, they can execute arbitrary commands on the system.
setuptools	65.4.1	<78.1.1	show Affected versions of Setuptools are vulnerable to Path Traversal via PackageIndex.download(). The impact is Arbitrary File Overwrite: An attacker would be allowed to write files to arbitrary locations on the filesystem with the permissions of the process running the Python code, which could escalate to RCE depending on the context.
setuptools	65.4.1	<65.5.1	show Setuptools 65.5.1 includes a fix for CVE-2022-40897: Python Packaging Authority (PyPA) setuptools before 65.5.1 allows remote attackers to cause a denial of service via HTML in a crafted package or custom PackageIndex page. There is a Regular Expression Denial of Service (ReDoS) in package_index.py.
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

feature/use_static_bed_file_for_ABRA

5 months, 4 weeks ago

8e270032

Update uncollapsed_bam_generation.cwl

setuptools 65.4.1 and pytest-runner 6.0.1 have known security vulnerabilities.

Package	Installed	Affected	Info
setuptools	65.4.1	<70.0.0	show Affected versions of Setuptools allow for remote code execution via its download functions. These functions, which are used to download packages from URLs provided by users or retrieved from package index servers, are susceptible to code injection. If these functions are exposed to user-controlled inputs, such as package URLs, they can execute arbitrary commands on the system.
setuptools	65.4.1	<78.1.1	show Affected versions of Setuptools are vulnerable to Path Traversal via PackageIndex.download(). The impact is Arbitrary File Overwrite: An attacker would be allowed to write files to arbitrary locations on the filesystem with the permissions of the process running the Python code, which could escalate to RCE depending on the context.
setuptools	65.4.1	<65.5.1	show Setuptools 65.5.1 includes a fix for CVE-2022-40897: Python Packaging Authority (PyPA) setuptools before 65.5.1 allows remote attackers to cause a denial of service via HTML in a crafted package or custom PackageIndex page. There is a Regular Expression Denial of Service (ReDoS) in package_index.py.
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

feature/use_static_bed_file_for_ABRA

5 months, 4 weeks ago

776c359e

Update subworkflows

setuptools 65.4.1 and pytest-runner 6.0.1 have known security vulnerabilities.

Package	Installed	Affected	Info
setuptools	65.4.1	<70.0.0	show Affected versions of Setuptools allow for remote code execution via its download functions. These functions, which are used to download packages from URLs provided by users or retrieved from package index servers, are susceptible to code injection. If these functions are exposed to user-controlled inputs, such as package URLs, they can execute arbitrary commands on the system.
setuptools	65.4.1	<78.1.1	show Affected versions of Setuptools are vulnerable to Path Traversal via PackageIndex.download(). The impact is Arbitrary File Overwrite: An attacker would be allowed to write files to arbitrary locations on the filesystem with the permissions of the process running the Python code, which could escalate to RCE depending on the context.
setuptools	65.4.1	<65.5.1	show Setuptools 65.5.1 includes a fix for CVE-2022-40897: Python Packaging Authority (PyPA) setuptools before 65.5.1 allows remote attackers to cause a denial of service via HTML in a crafted package or custom PackageIndex page. There is a Regular Expression Denial of Service (ReDoS) in package_index.py.
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

pyup-scheduled-update-2024-11-01

6 months ago

272e3843

Update toil from 5.10.0 to 7.0.0

pytest-runner 6.0.1 has known security vulnerabilities.

Package	Installed	Affected	Info
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

Package

Installed

Affected

Info

pytest-runner

6.0.1

>0

show

Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684.
It is recommended that you:
- Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option.
- Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option.
- Select a tool to bootstrap and then run tests such as tox.
https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

pyup-scheduled-update-2024-11-01

6 months ago

03dded2d

Update tox from 3.27.1 to 4.23.2

pytest-runner 6.0.1 has known security vulnerabilities.

Package	Installed	Affected	Info
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

Package

Installed

Affected

Info

pytest-runner

6.0.1

>0

show

Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684.
It is recommended that you:
- Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option.
- Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option.
- Select a tool to bootstrap and then run tests such as tox.
https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

pyup-scheduled-update-2024-11-01

6 months ago

59df782c

Update setuptools from 65.4.1 to 75.3.0

pytest-runner 6.0.1 has known security vulnerabilities.

Package	Installed	Affected	Info
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

Package

Installed

Affected

Info

pytest-runner

6.0.1

>0

show

Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684.
It is recommended that you:
- Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option.
- Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option.
- Select a tool to bootstrap and then run tests such as tox.
https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

pyup-scheduled-update-2024-11-01

6 months ago

4549038c

Update pytest from 7.2.0 to 8.3.3

setuptools 65.4.1 and pytest-runner 6.0.1 have known security vulnerabilities.

Package	Installed	Affected	Info
setuptools	65.4.1	<70.0.0	show Affected versions of Setuptools allow for remote code execution via its download functions. These functions, which are used to download packages from URLs provided by users or retrieved from package index servers, are susceptible to code injection. If these functions are exposed to user-controlled inputs, such as package URLs, they can execute arbitrary commands on the system.
setuptools	65.4.1	<78.1.1	show Affected versions of Setuptools are vulnerable to Path Traversal via PackageIndex.download(). The impact is Arbitrary File Overwrite: An attacker would be allowed to write files to arbitrary locations on the filesystem with the permissions of the process running the Python code, which could escalate to RCE depending on the context.
setuptools	65.4.1	<65.5.1	show Setuptools 65.5.1 includes a fix for CVE-2022-40897: Python Packaging Authority (PyPA) setuptools before 65.5.1 allows remote attackers to cause a denial of service via HTML in a crafted package or custom PackageIndex page. There is a Regular Expression Denial of Service (ReDoS) in package_index.py.
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

pyup-scheduled-update-2024-10-01

7 months ago

a82ae767

Update tox from 3.27.1 to 4.21.0

pytest-runner 6.0.1 has known security vulnerabilities.

Package	Installed	Affected	Info
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

Package

Installed

Affected

Info

pytest-runner

6.0.1

>0

show

Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684.
It is recommended that you:
- Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option.
- Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option.
- Select a tool to bootstrap and then run tests such as tox.
https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

pyup-scheduled-update-2024-10-01

7 months ago

6fa15ee8

Update toil from 5.10.0 to 7.0.0

pytest-runner 6.0.1 has known security vulnerabilities.

Package	Installed	Affected	Info
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

Package

Installed

Affected

Info

pytest-runner

6.0.1

>0

show

Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684.
It is recommended that you:
- Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option.
- Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option.
- Select a tool to bootstrap and then run tests such as tox.
https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

pyup-scheduled-update-2024-10-01

7 months ago

fa098c3a

Update setuptools from 65.4.1 to 75.1.0

pytest-runner 6.0.1 has known security vulnerabilities.

Package	Installed	Affected	Info
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

Package

Installed

Affected

Info

pytest-runner

6.0.1

>0

show

Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684.
It is recommended that you:
- Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option.
- Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option.
- Select a tool to bootstrap and then run tests such as tox.
https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

pyup-scheduled-update-2024-10-01

7 months ago

b5b63cb2

Update pytest from 7.2.0 to 8.3.3

setuptools 65.4.1 and pytest-runner 6.0.1 have known security vulnerabilities.

Package	Installed	Affected	Info
setuptools	65.4.1	<70.0.0	show Affected versions of Setuptools allow for remote code execution via its download functions. These functions, which are used to download packages from URLs provided by users or retrieved from package index servers, are susceptible to code injection. If these functions are exposed to user-controlled inputs, such as package URLs, they can execute arbitrary commands on the system.
setuptools	65.4.1	<78.1.1	show Affected versions of Setuptools are vulnerable to Path Traversal via PackageIndex.download(). The impact is Arbitrary File Overwrite: An attacker would be allowed to write files to arbitrary locations on the filesystem with the permissions of the process running the Python code, which could escalate to RCE depending on the context.
setuptools	65.4.1	<65.5.1	show Setuptools 65.5.1 includes a fix for CVE-2022-40897: Python Packaging Authority (PyPA) setuptools before 65.5.1 allows remote attackers to cause a denial of service via HTML in a crafted package or custom PackageIndex page. There is a Regular Expression Denial of Service (ReDoS) in package_index.py.
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

dependabot/pip/setuptools-70.0.0

8 months ago

544ac001

Bump setuptools from 65.4.1 to 70.0.0 Bumps [setuptools](https://github.com/pypa/setuptools) from 6

pytest-runner 6.0.1 has known security vulnerabilities.

Package	Installed	Affected	Info
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

Package

Installed

Affected

Info

pytest-runner

6.0.1

>0

show

Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684.
It is recommended that you:
- Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option.
- Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option.
- Select a tool to bootstrap and then run tests such as tox.
https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

master

8 months ago

6576bfce

Merge branch 'release/1.3.0'

setuptools 65.4.1 and pytest-runner 6.0.1 have known security vulnerabilities.

Package	Installed	Affected	Info
setuptools	65.4.1	<70.0.0	show Affected versions of Setuptools allow for remote code execution via its download functions. These functions, which are used to download packages from URLs provided by users or retrieved from package index servers, are susceptible to code injection. If these functions are exposed to user-controlled inputs, such as package URLs, they can execute arbitrary commands on the system.
setuptools	65.4.1	<78.1.1	show Affected versions of Setuptools are vulnerable to Path Traversal via PackageIndex.download(). The impact is Arbitrary File Overwrite: An attacker would be allowed to write files to arbitrary locations on the filesystem with the permissions of the process running the Python code, which could escalate to RCE depending on the context.
setuptools	65.4.1	<65.5.1	show Setuptools 65.5.1 includes a fix for CVE-2022-40897: Python Packaging Authority (PyPA) setuptools before 65.5.1 allows remote attackers to cause a denial of service via HTML in a crafted package or custom PackageIndex page. There is a Regular Expression Denial of Service (ReDoS) in package_index.py.
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

develop

8 months ago

b3fdfede

Merge pull request #54 from msk-access/feature/update_submoudles Feature/update submoudles

setuptools 65.4.1 and pytest-runner 6.0.1 have known security vulnerabilities.

Package	Installed	Affected	Info
setuptools	65.4.1	<70.0.0	show Affected versions of Setuptools allow for remote code execution via its download functions. These functions, which are used to download packages from URLs provided by users or retrieved from package index servers, are susceptible to code injection. If these functions are exposed to user-controlled inputs, such as package URLs, they can execute arbitrary commands on the system.
setuptools	65.4.1	<78.1.1	show Affected versions of Setuptools are vulnerable to Path Traversal via PackageIndex.download(). The impact is Arbitrary File Overwrite: An attacker would be allowed to write files to arbitrary locations on the filesystem with the permissions of the process running the Python code, which could escalate to RCE depending on the context.
setuptools	65.4.1	<65.5.1	show Setuptools 65.5.1 includes a fix for CVE-2022-40897: Python Packaging Authority (PyPA) setuptools before 65.5.1 allows remote attackers to cause a denial of service via HTML in a crafted package or custom PackageIndex page. There is a Regular Expression Denial of Service (ReDoS) in package_index.py.
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

feature/update_submoudles

8 months ago

fed93cd0

Update install_data.sh

setuptools 65.4.1 and pytest-runner 6.0.1 have known security vulnerabilities.

Package	Installed	Affected	Info
setuptools	65.4.1	<70.0.0	show Affected versions of Setuptools allow for remote code execution via its download functions. These functions, which are used to download packages from URLs provided by users or retrieved from package index servers, are susceptible to code injection. If these functions are exposed to user-controlled inputs, such as package URLs, they can execute arbitrary commands on the system.
setuptools	65.4.1	<78.1.1	show Affected versions of Setuptools are vulnerable to Path Traversal via PackageIndex.download(). The impact is Arbitrary File Overwrite: An attacker would be allowed to write files to arbitrary locations on the filesystem with the permissions of the process running the Python code, which could escalate to RCE depending on the context.
setuptools	65.4.1	<65.5.1	show Setuptools 65.5.1 includes a fix for CVE-2022-40897: Python Packaging Authority (PyPA) setuptools before 65.5.1 allows remote attackers to cause a denial of service via HTML in a crafted package or custom PackageIndex page. There is a Regular Expression Denial of Service (ReDoS) in package_index.py.
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

msk-access/uncollapsed_bam_generation