Safety CI > msk-access/uncollapsed_bam

pyup-scheduled-update-2024-10-01

1 year, 7 months ago

fa098c3a

Update setuptools from 65.4.1 to 75.1.0

pytest-runner 6.0.1 has known security vulnerabilities.

Package	Installed	Affected	Info
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

Package

Installed

Affected

Info

pytest-runner

6.0.1

>0

show

Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684.
It is recommended that you:
- Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option.
- Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option.
- Select a tool to bootstrap and then run tests such as tox.
https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

pyup-scheduled-update-2024-10-01

1 year, 7 months ago

b5b63cb2

Update pytest from 7.2.0 to 8.3.3

setuptools 65.4.1 and pytest-runner 6.0.1 have known security vulnerabilities.

Package	Installed	Affected	Info
setuptools	65.4.1	<70.0.0	show Affected versions of Setuptools allow for remote code execution via its download functions. These functions, which are used to download packages from URLs provided by users or retrieved from package index servers, are susceptible to code injection. If these functions are exposed to user-controlled inputs, such as package URLs, they can execute arbitrary commands on the system.
setuptools	65.4.1	<65.5.1	show Setuptools 65.5.1 includes a fix for CVE-2022-40897: Python Packaging Authority (PyPA) setuptools before 65.5.1 allows remote attackers to cause a denial of service via HTML in a crafted package or custom PackageIndex page. There is a Regular Expression Denial of Service (ReDoS) in package_index.py.
setuptools	65.4.1	<78.1.1	show Affected versions of Setuptools are vulnerable to Path Traversal via PackageIndex.download(). The impact is Arbitrary File Overwrite: An attacker would be allowed to write files to arbitrary locations on the filesystem with the permissions of the process running the Python code, which could escalate to RCE depending on the context.
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

dependabot/pip/setuptools-70.0.0

1 year, 8 months ago

544ac001

Bump setuptools from 65.4.1 to 70.0.0 Bumps [setuptools](https://github.com/pypa/setuptools) from 6

pytest-runner 6.0.1 has known security vulnerabilities.

Package	Installed	Affected	Info
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

Package

Installed

Affected

Info

pytest-runner

6.0.1

>0

show

Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684.
It is recommended that you:
- Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option.
- Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option.
- Select a tool to bootstrap and then run tests such as tox.
https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

master

1 year, 8 months ago

6576bfce

Merge branch 'release/1.3.0'

setuptools 65.4.1 and pytest-runner 6.0.1 have known security vulnerabilities.

Package	Installed	Affected	Info
setuptools	65.4.1	<70.0.0	show Affected versions of Setuptools allow for remote code execution via its download functions. These functions, which are used to download packages from URLs provided by users or retrieved from package index servers, are susceptible to code injection. If these functions are exposed to user-controlled inputs, such as package URLs, they can execute arbitrary commands on the system.
setuptools	65.4.1	<65.5.1	show Setuptools 65.5.1 includes a fix for CVE-2022-40897: Python Packaging Authority (PyPA) setuptools before 65.5.1 allows remote attackers to cause a denial of service via HTML in a crafted package or custom PackageIndex page. There is a Regular Expression Denial of Service (ReDoS) in package_index.py.
setuptools	65.4.1	<78.1.1	show Affected versions of Setuptools are vulnerable to Path Traversal via PackageIndex.download(). The impact is Arbitrary File Overwrite: An attacker would be allowed to write files to arbitrary locations on the filesystem with the permissions of the process running the Python code, which could escalate to RCE depending on the context.
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

develop

1 year, 8 months ago

b3fdfede

Merge pull request #54 from msk-access/feature/update_submoudles Feature/update submoudles

setuptools 65.4.1 and pytest-runner 6.0.1 have known security vulnerabilities.

Package	Installed	Affected	Info
setuptools	65.4.1	<70.0.0	show Affected versions of Setuptools allow for remote code execution via its download functions. These functions, which are used to download packages from URLs provided by users or retrieved from package index servers, are susceptible to code injection. If these functions are exposed to user-controlled inputs, such as package URLs, they can execute arbitrary commands on the system.
setuptools	65.4.1	<65.5.1	show Setuptools 65.5.1 includes a fix for CVE-2022-40897: Python Packaging Authority (PyPA) setuptools before 65.5.1 allows remote attackers to cause a denial of service via HTML in a crafted package or custom PackageIndex page. There is a Regular Expression Denial of Service (ReDoS) in package_index.py.
setuptools	65.4.1	<78.1.1	show Affected versions of Setuptools are vulnerable to Path Traversal via PackageIndex.download(). The impact is Arbitrary File Overwrite: An attacker would be allowed to write files to arbitrary locations on the filesystem with the permissions of the process running the Python code, which could escalate to RCE depending on the context.
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

feature/update_submoudles

1 year, 8 months ago

fed93cd0

Update install_data.sh

setuptools 65.4.1 and pytest-runner 6.0.1 have known security vulnerabilities.

Package	Installed	Affected	Info
setuptools	65.4.1	<70.0.0	show Affected versions of Setuptools allow for remote code execution via its download functions. These functions, which are used to download packages from URLs provided by users or retrieved from package index servers, are susceptible to code injection. If these functions are exposed to user-controlled inputs, such as package URLs, they can execute arbitrary commands on the system.
setuptools	65.4.1	<65.5.1	show Setuptools 65.5.1 includes a fix for CVE-2022-40897: Python Packaging Authority (PyPA) setuptools before 65.5.1 allows remote attackers to cause a denial of service via HTML in a crafted package or custom PackageIndex page. There is a Regular Expression Denial of Service (ReDoS) in package_index.py.
setuptools	65.4.1	<78.1.1	show Affected versions of Setuptools are vulnerable to Path Traversal via PackageIndex.download(). The impact is Arbitrary File Overwrite: An attacker would be allowed to write files to arbitrary locations on the filesystem with the permissions of the process running the Python code, which could escalate to RCE depending on the context.
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

feature/update_submoudles

1 year, 8 months ago

6856c137

Update test_ubg.yaml

setuptools 65.4.1 and pytest-runner 6.0.1 have known security vulnerabilities.

Package	Installed	Affected	Info
setuptools	65.4.1	<70.0.0	show Affected versions of Setuptools allow for remote code execution via its download functions. These functions, which are used to download packages from URLs provided by users or retrieved from package index servers, are susceptible to code injection. If these functions are exposed to user-controlled inputs, such as package URLs, they can execute arbitrary commands on the system.
setuptools	65.4.1	<65.5.1	show Setuptools 65.5.1 includes a fix for CVE-2022-40897: Python Packaging Authority (PyPA) setuptools before 65.5.1 allows remote attackers to cause a denial of service via HTML in a crafted package or custom PackageIndex page. There is a Regular Expression Denial of Service (ReDoS) in package_index.py.
setuptools	65.4.1	<78.1.1	show Affected versions of Setuptools are vulnerable to Path Traversal via PackageIndex.download(). The impact is Arbitrary File Overwrite: An attacker would be allowed to write files to arbitrary locations on the filesystem with the permissions of the process running the Python code, which could escalate to RCE depending on the context.
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

feature/update_submoudles

1 year, 8 months ago

2d1a8d56

Updating submodules and git actions

setuptools 65.4.1 and pytest-runner 6.0.1 have known security vulnerabilities.

Package	Installed	Affected	Info
setuptools	65.4.1	<70.0.0	show Affected versions of Setuptools allow for remote code execution via its download functions. These functions, which are used to download packages from URLs provided by users or retrieved from package index servers, are susceptible to code injection. If these functions are exposed to user-controlled inputs, such as package URLs, they can execute arbitrary commands on the system.
setuptools	65.4.1	<65.5.1	show Setuptools 65.5.1 includes a fix for CVE-2022-40897: Python Packaging Authority (PyPA) setuptools before 65.5.1 allows remote attackers to cause a denial of service via HTML in a crafted package or custom PackageIndex page. There is a Regular Expression Denial of Service (ReDoS) in package_index.py.
setuptools	65.4.1	<78.1.1	show Affected versions of Setuptools are vulnerable to Path Traversal via PackageIndex.download(). The impact is Arbitrary File Overwrite: An attacker would be allowed to write files to arbitrary locations on the filesystem with the permissions of the process running the Python code, which could escalate to RCE depending on the context.
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

pyup-scheduled-update-2024-09-01

1 year, 8 months ago

a7064b13

Pin pytest-runner to latest version 6.0.1

pytest-runner 6.0.1 has known security vulnerabilities.

Package	Installed	Affected	Info
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

Package

Installed

Affected

Info

pytest-runner

6.0.1

>0

show

Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684.
It is recommended that you:
- Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option.
- Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option.
- Select a tool to bootstrap and then run tests such as tox.
https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

pyup-scheduled-update-2024-09-01

1 year, 8 months ago

f3b124c7

Pin pytest to latest version 8.3.2

No dependencies with known security vulnerabilities.

pyup-scheduled-update-2024-09-01

1 year, 8 months ago

e1472cd1

Pin twine to latest version 5.1.1

No dependencies with known security vulnerabilities.

pyup-scheduled-update-2024-09-01

1 year, 8 months ago

9e44c201

Pin tox to latest version 4.18.0

No dependencies with known security vulnerabilities.

pyup-scheduled-update-2024-09-01

1 year, 8 months ago

ba8503e9

Pin flake8 to latest version 7.1.1

No dependencies with known security vulnerabilities.

pyup-scheduled-update-2024-09-01

1 year, 8 months ago

8180a4b4

Pin bumpversion to latest version 0.6.0

No dependencies with known security vulnerabilities.

pyup-scheduled-update-2024-09-01

1 year, 8 months ago

4ee6bc6c

Pin pytz to latest version 2024.1

No dependencies with known security vulnerabilities.

msk-access/uncollapsed_bam_generation