Safety CI > msk-access/bam

feature/iris_fix

2 days, 19 hours ago

53fa3dc5

Update command_line_tools with dynamic ramMin/disk scaling fix Co-Authored-By: Claude Sonnet 4.6 <n

Server Error.

feature/iris_fix

3 days, 14 hours ago

075cc57c

Update submodules with dynamic Xmx fix for 12 tools Co-Authored-By: Claude Sonnet 4.6 <noreply@anth

Server Error.

feature/iris_fix

1 week, 6 days ago

3298cc51

Update command_line_tools and subworkflows with abra2_2.22 OOM fix Co-Authored-By: Claude Sonnet 4.

Server Error.

feature/iris_fix

2 weeks ago

3fc54fdb

Update command_line_tools and subworkflows with multiplier fixes and 240 GB cap Co-Authored-By: Cla

Server Error.

feature/iris_fix

2 weeks ago

f51d1707

Update command_line_tools and subworkflows to feature/iris_fix with dynamic ramMin for 4 tools Co-A

Server Error.

feature/iris_fix

2 weeks ago

cdd94d1e

Update command_line_tools and subworkflows to feature/iris_fix with dynamic ramMin for 7 tools Co-A

Server Error.

feature/iris_fix

2 weeks ago

c1a74042

Update command_line_tools to d6fa3c4 and subworkflows to 2296d40 Co-Authored-By: Claude Sonnet 4.6

Server Error.

feature/iris_fix

2 weeks, 1 day ago

1759d721

Update command_line_tools to 0725ef9 and subworkflows to e669b19 Co-Authored-By: Claude Sonnet 4.6

Server Error.

feature/iris_fix

2 weeks, 1 day ago

5a7611a2

Add abra2_memory_per_job/overhead inputs and update submodules to 016abb0/90b0363 Wires memory para

Server Error.

feature/iris_fix

3 weeks, 2 days ago

2d31f819

Update command_line_tools and subworkflows to feature/iris_fix with tmpdirMin additions Co-Authored

Server Error.

feature/iris_fix

3 weeks, 6 days ago

da209129

Update subworkflows to feature/iris_fix with complete outdirMin coverage Co-Authored-By: Claude Son

Server Error.

feature/iris_fix

3 weeks, 6 days ago

803c9813

Update command_line_tools to feature/iris_fix with full outdirMin coverage Co-Authored-By: Claude S

Server Error.

feature/iris_fix

1 month, 1 week ago

be72f9b1

Update command_line_tools submodule to feature/iris_fix with outdirMin fixes Co-Authored-By: Claude

Server Error.

pyup-scheduled-update-2024-12-01

1 year, 6 months ago

e4bf35da

Update tox from 3.27.1 to 4.23.2

pytest-runner 6.0.1 has known security vulnerabilities.

Package	Installed	Affected	Info
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

Package

Installed

Affected

Info

pytest-runner

6.0.1

>0

show

Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684.
It is recommended that you:
- Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option.
- Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option.
- Select a tool to bootstrap and then run tests such as tox.
https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

pyup-scheduled-update-2024-12-01

1 year, 6 months ago

1d44cf13

Update toil from 5.10.0 to 7.0.0

pytest-runner 6.0.1 has known security vulnerabilities.

Package	Installed	Affected	Info
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

Package

Installed

Affected

Info

pytest-runner

6.0.1

>0

show

Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684.
It is recommended that you:
- Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option.
- Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option.
- Select a tool to bootstrap and then run tests such as tox.
https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

msk-access/bam_collapsing