Uproot

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Page 7 of 55

5.0.5

New features

_(none!)_

Bug-fixes and performance

* fix: test 0814 name by ioanaif in https://github.com/scikit-hep/uproot5/pull/845
* fix: update licence url for tests by ioanaif in https://github.com/scikit-hep/uproot5/pull/846
* fix: replaced incorrect AwkwardForth `var_set` logic with a check to see if the Form is complete by jpivarski in https://github.com/scikit-hep/uproot5/pull/851
* fix: unable to delete hist from ROOT file by ioanaif in https://github.com/scikit-hep/uproot5/pull/844
* fix: AwkwardForth was nesting the same ListOffsetArray (same node name) multiple times by jpivarski in https://github.com/scikit-hep/uproot5/pull/855

Other

* ci: [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/scikit-hep/uproot5/pull/842
* chore: don't repeat awkward dependency by agoose77 in https://github.com/scikit-hep/uproot5/pull/843
* chore(deps): bump pypa/gh-action-pypi-publish from 1.6.4 to 1.7.1 by dependabot in https://github.com/scikit-hep/uproot5/pull/856

**Full Changelog**: https://github.com/scikit-hep/uproot5/compare/v5.0.4...v5.0.5

5.0.4

New features

* feat: allow `uproot.dask` to re-map forms at the data source by lgray in https://github.com/scikit-hep/uproot5/pull/830
* feat: add support for TLeafG by ioanaif in https://github.com/scikit-hep/uproot5/pull/840

Bug-fixes and performance

* fix: separate ZstdDecompressor for each thread (re-do) by nsmith- in https://github.com/scikit-hep/uproot5/pull/828
* fix: `_awkward_forth.symbol_dict` was missing `np.dtype(">i1")` by jpivarski in https://github.com/scikit-hep/uproot5/pull/827
* fix: ak_add_doc should add docs to both the lazy and the materialized array. by jpivarski in https://github.com/scikit-hep/uproot5/pull/832
* fix: Uproot should be able to run without Awkward. by jpivarski in https://github.com/scikit-hep/uproot5/pull/831
* fix: add ttree title to __doc__ of top level record by lgray in https://github.com/scikit-hep/uproot5/pull/836
* fix: complain about CannotBeAwkward earlier, before reading data. by jpivarski in https://github.com/scikit-hep/uproot5/pull/838
* fix: models should not be wrapped in a ListOffsetForm by ioanaif in https://github.com/scikit-hep/uproot5/pull/841
* fix: let form mappings apply a behavior by lgray in https://github.com/scikit-hep/uproot5/pull/834

Other

* docs: add renyhp as a contributor for code by allcontributors in https://github.com/scikit-hep/uproot5/pull/829
* ci: [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/scikit-hep/uproot5/pull/839
* chore: move to Ruff by henryiii in https://github.com/scikit-hep/uproot5/pull/825

New Contributors
* lgray made their first contribution in https://github.com/scikit-hep/uproot5/pull/830
* ioanaif made their first contribution in https://github.com/scikit-hep/uproot5/pull/841

**Full Changelog**: https://github.com/scikit-hep/uproot5/compare/v5.0.3...v5.0.4

5.0.3

New features

* feat: Infrastructure for writing of RNTuple (incomplete functionality) by Moelf in https://github.com/scikit-hep/uproot5/pull/705
* feat: [WIP] RNTuple Basic Writing by Moelf in https://github.com/scikit-hep/uproot5/pull/813

Bug-fixes and performance

* fix: an uproot.dask test was wrong; revealed by new dask-awkward. by jpivarski in https://github.com/scikit-hep/uproot5/pull/812
* fix: separate AwkwardForth machine for each TBranch context. by jpivarski in https://github.com/scikit-hep/uproot5/pull/819
* fix: separate ZstdDecompressor for each thread. by jpivarski in https://github.com/scikit-hep/uproot5/pull/820

Other

* ci: [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/scikit-hep/uproot5/pull/810
* ci: pre-commit autoupdate by pre-commit-ci in https://github.com/scikit-hep/uproot5/pull/821

**Full Changelog**: https://github.com/scikit-hep/uproot5/compare/v5.0.2...v5.0.3

5.0.2

New features

_(none!)_

Bug-fixes and performance

* fix: uproot.dask: Protect against `branches=None` in `project_columns` by douglasdavis in https://github.com/scikit-hep/uproot5/pull/806
* fix: AsStridedObjects.awkward_form was still including the '' members. by jpivarski in https://github.com/scikit-hep/uproot5/pull/808

Other

* ci: [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/scikit-hep/uproot5/pull/807


**Full Changelog**: https://github.com/scikit-hep/uproot5/compare/v5.0.1...v5.0.2

5.0.1

New features

_(none!)_

Bug-fixes and performance

* fix: protect Uproot's 'project_columns' from Dask node names. by jpivarski in https://github.com/scikit-hep/uproot5/pull/801

Other

* ci: [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/scikit-hep/uproot5/pull/799
* docs: update documentation about Pandas; we don't do MultiIndex anymore. by jpivarski in https://github.com/scikit-hep/uproot5/pull/802
* chore(deps): bump pypa/gh-action-pypi-publish from 1.6.1 to 1.6.4 by dependabot in https://github.com/scikit-hep/uproot5/pull/797

**Full Changelog**: https://github.com/scikit-hep/uproot5/compare/v5.0.0...v5.0.1

5.0.0

Uproot version 5 has a few major new features, one removal (`uproot.lazy`), and is based on [Awkward Array version 2](https://github.com/scikit-hep/awkward/releases/tag/v2.0.0) instead of version 1.

uproot.lazy → uproot.dask

kkothari2001 upgraded Uproot from Awkward version 1 to version 2, the major part of which was replacing `uproot.lazy`, which is based on Awkward 1's virtual and partitioned lazy arrays, with the new Dask collection, [dask-awkward](https://github.com/dask-contrib/dask-awkward). The entry point for this function is `uproot.dask`.

kkothari2001 also simplified Uproot's Pandas backend, which used to "explode" ragged arrays from ROOT into Pandas DataFrames with a non-trivial MultiIndex. Now, it takes advantage of [awkward-pandas](https://github.com/intake/awkward-pandas) to put ragged (and more complex) Awkward Arrays directly into Pandas columns.

If you want the old behavior, you can read data using `library="ak"` to get an Awkward Array, and use [ak.to_dataframe](https://awkward-array.org/doc/main/reference/generated/ak.to_dataframe.html) to "explode" the data into a MultiIndex.

TTree-reading with AwkwardForth

aryan26roy added a new code path to the TTree-reading routines to read them with AwkwardForth instead of pure Python. Users won't see any _interface_ changes due to this code, but the performance of reading TBranches with `AsObject` or `AsStrings` Interpretations should be orders of magnitude faster. For example, `std::vector<std::vector<float>>` reading is now 400× faster.

Reading RNTuples

Moelf added a complete reader of RNTuple data with most of an RNTuple-writer in an unmerged pull request (705). Although the RNTuple format is still in development, this is a very good start at reading RNTuple data, whose structure is a close match to Awkward Arrays (so the translation is more one-to-one than it is for TTrees, for instance).

New features

* feat: move to hatchling by henryiii in https://github.com/scikit-hep/uproot5/pull/688
* feat: `from_map` like optimization for dask arrays by kkothari2001 in https://github.com/scikit-hep/uproot5/pull/679
* feat: Finalizing AwkwardForth reader for Uproot by aryan26roy in https://github.com/scikit-hep/uproot5/pull/644
* feat: implemented NON-memberwise deserialization for AsMap. by jpivarski in https://github.com/scikit-hep/uproot5/pull/746
* feat: Added column_projection optimization by kkothari2001 in https://github.com/scikit-hep/uproot5/pull/755
* feat: support categorical axes on boost histograms by lobis in https://github.com/scikit-hep/uproot5/pull/764
* feat: warn about TBranch name, alias name conflict. by jpivarski in https://github.com/scikit-hep/uproot5/pull/776
* feat: any Mapping assigned to a WritableDirectory is interpreted as a TTree or failure, no fall-through. by jpivarski in https://github.com/scikit-hep/uproot5/pull/779
* feat: add 'interp_options' mechanism and ak_add_doc. by jpivarski in https://github.com/scikit-hep/uproot5/pull/784
* feat: Use awkward pandas, instead of the existing code that explodes Pandas Dataframes by kkothari2001 in https://github.com/scikit-hep/uproot5/pull/734
* feat: made 'very optional' arguments keyword-only by jpivarski in https://github.com/scikit-hep/uproot5/pull/787
* feat: adjust for name change in scikit-hep/awkward1919. by jpivarski in https://github.com/scikit-hep/uproot5/pull/788

Bug-fixes and performance

* fix: depend on packaging, not setuptools vendored packaging by henryiii in https://github.com/scikit-hep/uproot5/pull/684
* fix: Avoid triggering temporary dask-awkward/awkward incompatibility. by jpivarski in https://github.com/scikit-hep/uproot5/pull/694
* fix: Do not write incorrect fSumw2 in histograms (v5). by jpivarski in https://github.com/scikit-hep/uproot5/pull/698
* fix: Fixes uproot.dask bug with empty branches by kkothari2001 in https://github.com/scikit-hep/uproot5/pull/700
* fix: Use `from_map` optimization for delayed numpy arrays and add tests with empty branches for the same by kkothari2001 in https://github.com/scikit-hep/uproot5/pull/703
* fix: use ctx manager to ensure resources are freed by agoose77 in https://github.com/scikit-hep/uproot5/pull/713
* fix: ReadOnlyDirectory should provide the largest abs(cycle) when cycle is unspecified, not the largest cycle. by jpivarski in https://github.com/scikit-hep/uproot5/pull/715
* fix: regularize ROOT type aliases to C fundamental type names. by jpivarski in https://github.com/scikit-hep/uproot5/pull/717
* fix: avoid empty TBasket issue in embedded TBasket by jpivarski in https://github.com/scikit-hep/uproot5/pull/751
* fix: don't use Awkward in test_0751 that doesn't need it by jpivarski in https://github.com/scikit-hep/uproot5/pull/753
* fix: working TList serialization by lobis in https://github.com/scikit-hep/uproot5/pull/763
* fix: histogram weights not handled correctly in hist / boost conversion by lobis in https://github.com/scikit-hep/uproot5/pull/774
* perf: streamline metadata handling for TBranch name lookup and uproot.dask by jpivarski in https://github.com/scikit-hep/uproot5/pull/772
* fix: ensure AwkwardForth fallback path is tested without history. by jpivarski in https://github.com/scikit-hep/uproot5/pull/780
* fix: all AwkwardForth Forms now agree with awkward_form method output. by jpivarski in https://github.com/scikit-hep/uproot5/pull/790
* fix: Uproot tests now work with Awkward 2.0.0. by jpivarski in https://github.com/scikit-hep/uproot5/pull/795

Other

* Manually add a Model for TMatrixTSym<double>. by jpivarski in https://github.com/scikit-hep/uproot5/pull/484
* Updating docs and test in response to the removal of uproot.lazy in Uproot5 by kkothari2001 in https://github.com/scikit-hep/uproot5/pull/615
* changed arguments for awkward_form by aryan26roy in https://github.com/scikit-hep/uproot5/pull/617
* Completed the Forth based AsStrings reader. by aryan26roy in https://github.com/scikit-hep/uproot5/pull/616
* Actually pass user-specified 'awkward_form' arguments into context. by jpivarski in https://github.com/scikit-hep/uproot5/pull/622
* Fix annoying gaps in test files. by jpivarski in https://github.com/scikit-hep/uproot5/pull/625
* Cleaning up string generation in streamers.py by aryan26roy in https://github.com/scikit-hep/uproot5/pull/629
* chore: add dependabot for actions by henryiii in https://github.com/scikit-hep/uproot5/pull/631
* Bump actions/checkout from 2 to 3 by dependabot in https://github.com/scikit-hep/uproot5/pull/632
* Bump actions/upload-artifact from 2 to 3 by dependabot in https://github.com/scikit-hep/uproot5/pull/633
* Bump pypa/gh-action-pypi-publish from 1.4.2 to 1.5.0 by dependabot in https://github.com/scikit-hep/uproot5/pull/634
* Bump actions/download-artifact from 2 to 3 by dependabot in https://github.com/scikit-hep/uproot5/pull/635
* Forth based ROOT reader (revised) by aryan26roy in https://github.com/scikit-hep/uproot5/pull/636
* Set up tests for AsObjects, for the AwkwardForth reader by jpivarski in https://github.com/scikit-hep/uproot5/pull/637
* Iterate over objects in TDirectory in linear time. by jpivarski in https://github.com/scikit-hep/uproot5/pull/638
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/scikit-hep/uproot5/pull/641
* Awkward v2 update by kkothari2001 in https://github.com/scikit-hep/uproot5/pull/620
* docs: add aryan26roy as a contributor for code by allcontributors in https://github.com/scikit-hep/uproot5/pull/645
* docs: add kkothari2001 as a contributor for code by allcontributors in https://github.com/scikit-hep/uproot5/pull/646
* docs: add Moelf as a contributor for code by allcontributors in https://github.com/scikit-hep/uproot5/pull/647
* chore: cleanup flake8 by henryiii in https://github.com/scikit-hep/uproot5/pull/527
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/scikit-hep/uproot5/pull/650
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/scikit-hep/uproot5/pull/654
* Bump pypa/gh-action-pypi-publish from 1.5.0 to 1.5.1 by dependabot in https://github.com/scikit-hep/uproot5/pull/656
* Primitive Support for RNTuple by Moelf in https://github.com/scikit-hep/uproot5/pull/630
* Set ReadOnlyDirectory attributes when fSeekKeys == 0 by kakwok in https://github.com/scikit-hep/uproot5/pull/660
* docs: add kakwok as a contributor for code by allcontributors in https://github.com/scikit-hep/uproot5/pull/663
* Dask awkward support for uproot.dask by kkothari2001 in https://github.com/scikit-hep/uproot5/pull/652
* pathlib.Path drops '//' (naturally), but it's sometimes used for URLs by jpivarski in https://github.com/scikit-hep/uproot5/pull/670
* Gets the number of overflow bins for hist.axis.IntCategory, at least. by jpivarski in https://github.com/scikit-hep/uproot5/pull/671
* Prevent std::pair from being AsStridedObjects. by jpivarski in https://github.com/scikit-hep/uproot5/pull/673
* Implement transformed axis from boost-histogram/hist. by jpivarski in https://github.com/scikit-hep/uproot5/pull/675
* AsDynamic has no self._header. by jpivarski in https://github.com/scikit-hep/uproot5/pull/674
* Fixed TTree write_anew in a subdirectory (consistent caches). by jpivarski in https://github.com/scikit-hep/uproot5/pull/677
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/scikit-hep/uproot5/pull/657
* Implement stl containers for RNTuple by Moelf in https://github.com/scikit-hep/uproot5/pull/662
* Multiple clusters support for RNTuple by Moelf in https://github.com/scikit-hep/uproot5/pull/682
* ci: Get test dependencies from one source by jpivarski in https://github.com/scikit-hep/uproot5/pull/686
* ci: autocancel repeated runs by henryiii in https://github.com/scikit-hep/uproot5/pull/685
* ci: use mamba by henryiii in https://github.com/scikit-hep/uproot5/pull/683
* ci: Lint PR titles according to conventional commits by jpivarski in https://github.com/scikit-hep/uproot5/pull/689
* docs: Installation requirements and error text for dask/dask-awkward in extras.py by jpivarski in https://github.com/scikit-hep/uproot5/pull/690
* ci: use concurrency group for `semantic-pr-title` by agoose77 in https://github.com/scikit-hep/uproot5/pull/691
* docs: Add image for dask docs by kkothari2001 in https://github.com/scikit-hep/uproot5/pull/708
* ci: [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/scikit-hep/uproot5/pull/706
* chore: dask_awkward.test_utils moved in ContinuumIO/dask-awkward76 by jpivarski in https://github.com/scikit-hep/uproot5/pull/714
* test: adjust for boost-histogram 1.3.2's _storage_type deprecation. by jpivarski in https://github.com/scikit-hep/uproot5/pull/719
* ci: [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/scikit-hep/uproot5/pull/716
* add veprbl as a contributor by allcontributors in https://github.com/scikit-hep/uproot5/pull/728
* add nikoladze as a contributor by allcontributors in https://github.com/scikit-hep/uproot5/pull/729
* add klieret as a contributor by allcontributors in https://github.com/scikit-hep/uproot5/pull/730
* add dcervenkov as a contributor by allcontributors in https://github.com/scikit-hep/uproot5/pull/731
* add beojan as a contributor by allcontributors in https://github.com/scikit-hep/uproot5/pull/732
* add agoose77 as a contributor by allcontributors in https://github.com/scikit-hep/uproot5/pull/733
* docs: add a CITATION.cff for Uproot. by jpivarski in https://github.com/scikit-hep/uproot5/pull/726
* chore: drop Python 3.6. by jpivarski in https://github.com/scikit-hep/uproot5/pull/742
* ci: remove GHA workaround for macOS Python 3.11 by henryiii in https://github.com/scikit-hep/uproot5/pull/743
* chore: some cleanup inpsired by refurb by henryiii in https://github.com/scikit-hep/uproot5/pull/745
* chore(deps): update pre-commit hooks by pre-commit-ci in https://github.com/scikit-hep/uproot5/pull/737
* chore(deps): bump amannn/action-semantic-pull-request from 4 to 5 by dependabot in https://github.com/scikit-hep/uproot5/pull/757
* chore: update Uproot to require Awkward 2.0.0rc1. by jpivarski in https://github.com/scikit-hep/uproot5/pull/765
* ci: update to Python 3.11 final by henryiii in https://github.com/scikit-hep/uproot5/pull/766
* docs: add lobis as a contributor for code by allcontributors in https://github.com/scikit-hep/uproot5/pull/771
* refactor: refactor Forth generation by aryan26roy in https://github.com/scikit-hep/uproot5/pull/710
* chore: remove Identifier and `"uproot"` parameter. by jpivarski in https://github.com/scikit-hep/uproot5/pull/770
* ci: [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/scikit-hep/uproot5/pull/773
* refactor: final refactoring for Forth generation by aryan26roy in https://github.com/scikit-hep/uproot5/pull/749
* docs: fix TRef.py doc urls by veprbl in https://github.com/scikit-hep/uproot5/pull/782
* ci: pre-commit autoupdate by pre-commit-ci in https://github.com/scikit-hep/uproot5/pull/783
* docs: `uproot.dask` docs by kkothari2001 in https://github.com/scikit-hep/uproot5/pull/702
* test: make tests parallelizable (custom_classes in uproot.open). by jpivarski in https://github.com/scikit-hep/uproot5/pull/786
* ci: [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/scikit-hep/uproot5/pull/789
* chore(deps): bump pypa/gh-action-pypi-publish from 1.5.1 to 1.6.1 by dependabot in https://github.com/scikit-hep/uproot5/pull/792
* ci: [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/scikit-hep/uproot5/pull/793

New Contributors
* aryan26roy made their first contribution in https://github.com/scikit-hep/uproot5/pull/617
* dependabot made their first contribution in https://github.com/scikit-hep/uproot5/pull/632
* Moelf made their first contribution in https://github.com/scikit-hep/uproot5/pull/630
* agoose77 made their first contribution in https://github.com/scikit-hep/uproot5/pull/691
* lobis made their first contribution in https://github.com/scikit-hep/uproot5/pull/763

**Full Changelog**: https://github.com/scikit-hep/uproot5/compare/4.2.4...v5.0.0

Page 7 of 55

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