Transcriptic

------


Updated
~~~~~~~

- Shifted non-core cli dependencies (i.e. those used in analysis) to
the ``extras_require`` field
- Shifted relative imports in base ``__init__`` file to make this
possible
- Shifted ``objects`` to a separate Jupyter module, but preserved
existing relative imports path for backwards compatibility
- Documentation updated to reflect the changes

------


Fixed
~~~~~

- Error with ``transcriptic launch --local`` when a file is provided

------


Fixed
~~~~~

- FileNotFound incompatibility error for Python2 (when ~/.transcriptic
file isn’t specified)

------


Fixed
~~~~~

- Made cookie updates actually update headers

------


Fixed
~~~~~

- in ``Connection.upload_dataset()``, only convert io.StringIO instance
to bytes, not StringIO.StringIO instance
- Issue with ``upload-release``

------


Added
~~~~~

- Added concept of HiddenOption and email and token as input parameters
Updated
- Use ``Sessions`` object for maintaining persistent api connection
- Reworked env_args and headers setting and getting to be clearer and
more consistent
- CLI now automatically fits flags in the order of: –flag, environment
variable, .transcriptic
- More formal support for cookie-based authentication Fixed
- Improvements to the way non-unique projects are handled
- Improved error handling for Py2 Removed
- ``use_environ`` flag is now deprecated in ``Connection``. Please
specify environment parameters directly
- ``organization`` is now deprecated from ``Connection``. Please use
``organization_id`` instead