Transcriptic

------

Fixed
~~~~~

- Issue with bash syntax for Travis config

------

Added
~~~~~

- Codecov configuration for coverage
- Binder badge and updated Dockerfile

Fixed
~~~~~

- Repeated deploy issue with Travis config
- Encoding error when using dataset upload API with request signing enabled
- Bad request error when making calls to non-Strateos endpoints (e.g. S3) with authorization headers set

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Added
~~~~~

- Support bearer token authentication

Updated
~~~~~~~

- Pin black version to 20.8b1 for local dev env consistency
- Remove util.robotize/humanize and change callers to use autoprotocol directly

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Added
~~~~~

- .readthedocs.yml configuration for docs building, corresponding badge
- pre-commit framework and linting
- auto-deploy functionality
- Fish completions
- Autoprotocol dependency for ``analysis`` package

Updated
~~~~~~~

- Transitioned all .md files to .rst files
- Doc dependencies, Sphinx to 2.4, releases to 1.6.3, sphinx-rtd-theme to 0.4.3
- Test dependencies, pytest to 5.4, pylint to 2.5.2, tox to 3.15
- Travis build reorganized to distinct jobs
- Support for Python 3.8
- Made adding autocomplete functionality more explicit
- Base CLI test framework
- Standardize on kebab-case for cli commands
- Plotly dependency to 1.13
- Matplotlib dependency to 3.0.3
- Spectrophotometry plots now render offline
- Dataset object html representation increased

Fixed
~~~~~

- Kinetics.Spectrophotometry.plot() function now works again
- Spectrophotometry.Absorbance/Fluorescence/Luminescence plot() works
again

Removed
~~~~~~~

- References to Phabricator
- Support for Python 3.5

------


Added
~~~~~

- Add optional Run title to Launch command


Fixed
~~~~~

- Removal of ``can_submit_autoprotocol`` feature group in the default
``.transcriptic``

------


Added
~~~~~

- zsh auto-completion support


Updated
~~~~~~~

- Support only Python >=3.5, drop Python 2 support
- Pin dependencies
- Email references to point towards strateos