Transcriptic

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Added
~~~~~

- Helper function ``flatmap`` into util Fixed
- Fixed resources route in CLI. ``transcriptic resources 'query'`` now
works

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Updated
~~~~~~~

- Simplified ``Container._parse_container_type`` to use matching AP-Py
container-type object whenever possible

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Added
~~~~~

- additional documentation for ``Connection`` object Updated
- update relevant documentation.rst files

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Updated
~~~~~~~

- Updated “url” reference in run attributes to use “id” instead,
in-line with a web update Fixed
- Update docs/requirements.txt to be PEP440 compatible

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Updated
~~~~~~~

- Reworked ``Instruction`` object
- Reworked ``Run.instructions`` to return a Dataframe of
``Instruction`` objects
- ``Aliquot`` object has been reworked into Container object as an
``aliquots`` property


Removed
~~~~~~~

- ``Resource`` object has been removed from the library as its
currently unused


Fixed
~~~~~

- Change check for ImagePlate to be more generic
- Setup now requires plotly 1.9.6 (for plotly offline/ipython
compatibility reasons)

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Added
~~~~~

- Tab completion for CLI (enabled by sourcing
``transcriptic_complete.sh``)
- New API route for getting zipfiles: ``api.get_zip``
- Made -h option synonymous with –help