Toulligqc

* New CSS for HTML report
* Add new plots (Read length and PHRED over time, translocation speed...)
* Enhancement of existing graphs
* Big refactoring code for sequencing summary file parsing
* Big refactoring code for creating plots
* Reduce memory usage and execution time with barcodes
* Fix Plotly dependency version requirement
* Add L50 computation
* Sequence lengths of reads was stored into np.int16 that cannot handle >=32kb reads. Now use np.uint32
* Add ToulligQC logo in HTML report
* A telemetry file or Fast5 file is no more required
* Add new fields in the two first tables of the report: Run ID, operating system and basecalling date
* Barcode distribution pie charts can now be visualised as histograms
* In table, float values have now comma separator for thousands
* Update the yield number format in run statistocs table
* Update colors in the graphs
* Add an information link in all the graph titles

* Fix import bug
* Fix graph names partially hidden in HTML summary element
* Rewrite help and rename arguments for clarity
* Create required and optional argument groups
* Create default values for --report-name and --output command line arguments
* Update report.html example in Docs with the new version of ToulliQC
* Create new presentation image for README

* Refactoring of the sequencing_summary_extractor
* Refactoring of the 1dsqr_sequencing_summary_extractor
* Many performance improvements (reducing memory usage)
* Graphs are now made with Plotly
* Removal of unused options (Albacore log, FASTQ files, configuration file and samplesheet file)
* N50 information added to report.html
* Removal of Albacore support
* Now handle PromethION data
* Update of required dependencies versions
* Add unit tests
* Add new plots (throughput sequencing time)
* Update graph colors

* Add a --barcodes option that allow to avoid samplesheet file creation
* The size of the graphs are now set to 1000x600px
* Many small fixes in graph generation (remove titles, fix grids and layouts...)
* In the HTML report, replace the tooltip icon by an unicode character

* MultiFast5 file can now be used to retrieve run information
* Reporting other barcodes in the "other" category
* Gathering information from Telemetry files in the HTML report

* Add Guppy support for 1D and 1D2
* Telemetry files generated by Albacore or Guppy can now be used to retrieve run information instead of reading a FAST5 file and the pipeline.log file.
* Refactoring of the code of the extractors