Staphb-toolkit

Latest version: v2.0.1

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1.2.0

Changes:
* added cutshaw workflow
* added mafft
* dryad index fix
* update to NCBI AMRFinder plus
* various bug fixes

1.1.2

Changes:
* Bash pipe bug fix
* Collision issue in trimmomatic workflows
* Report builder bug fix

1.1.1

Changes:
* Version information is now displayed from help menu
* More output from update function

1.1.0

Changes:
* Tredegar cpu/mem set based on resource availability
* Tredegar log files restructured
* Hickory workflow for SNP-reference selection incorporated
* Removed default "_" separator for sample names from workflows, will now default to using whole file names

1.0.5

Fixed issues surrounding the report builder for dryad.

1.0.4

Fixed the following:
* application updating
* dryad fromPath error
* ont basecalling queue
* added Nextflow tower to configs
* param.name_split_on standardized

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