Sourmash

Features:

- Add hp encoding for proteins (758)
- Add `sourmash signature filter` to do abundance filtering. (748)
- add a --abundances-from flag to sourmash signature intersect, to preserve abundances (747)

Improvements:

- Include more base deps: numpy, scipy and matplotlib (770)
- bam2fasta package to simplify sourmash compute (768)
- Optimize KmerMinHash add_sequence (744)

Bugs:

- Force signature order in test_sig_filter_1 to fix heisenbug (761)
- save_signatures with a file opened in binary mode fails (746)
- saved fasta files incorrectly (740)
- Bug: segfault with set_abundances (745)

Build, CI and docs:

- update cibuildwheel (774)
- Fix asv benchmarks (509) (759)
- add the f1000 paper (739)
- release docs update (554)

Rust changes:

- Experimental SBT with MQF internal nodes in Rust (772)
- Fixes for WASI compilation (771)
- changes to rust code from core/rust branch (760)

- Parallelized compare function with multiprocessing (709)
- add compute signatures for 10x bam file (713)
- Experimental v5 SBT format (694)
- initial refactor of compute command (and associated test module) (734)
- Fix --output-unassigned to output abundances if available. (726)
- Update docstring for `--traverse-directory` on `sourmash index` (727)

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First production release of sourmash.