* Rename ``ID`` column to ``geneID`` (using ``ID`` has the potential to clash with other programs where this is a reserved word). * Various improvements to some of the column descriptions on the "notes" page of the output XLS file. * In all analyses, now only use those genes flagged as differentially expressed (use all if no flag was specified on the input gene data).
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0.2.0
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* Only performs analyses which are appropriate for the supplied ChIP peak data i.e. ignore "region"-based analyses if ChIP data are summits, or summit-based analyses if data are regions.
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0.1.4
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* Program will stop if it encounters any 'bad' lines in the RNA-seq/transcipt input data, with the exception of the first line (which is treated as a header and skipped if it contains bad data). * New option ``--no-xls``: suppresses output of XLS spreadsheet.
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0.1.3
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* Skip input transcripts where 'start' position is higher than 'end'. * In output spreadsheet, splits the lists of ``transcripts inbetween`` across multiple columns in the ``TSSToSummits`` sheet if they exceed 250 characters, and creates multiple sheets for result sets that exceed 65536 rows.
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0.1.2
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* Fixed failure when using with Python 2.4 (``optparse.OptionParser`` "epilog" argument is unsupported)
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0.1.1
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* Updated to use ``optparse`` library to process command line arguments, and substantially expanded help text (available using ``-h`` or ``--help`` option).