Qsiprep

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* IMPORTANT: commandline call changed to use official BIDS App
* eddy will use multiple cores if available
* Fixed bug in sentry interaction

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* Bugfix: masking was not working on eddy.
* Bugfix: static versioning was not workign in the container.
* New graphics in the documentation.
* Use BSpline Interpolation if --output-resolution is higher than the input resolution.

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An issue was discovered in how voxel orientation interacts with TOPUP/eddy and outside
fieldmaps. Unless everything is in LAS+ prior to going into TOPUP/eddy, the warps are
incorrectly applied at the end of eddy. This resulted in fieldmap unwarping reports that
looked good but a final output that is bizarrely warped. Additionally, GRE fieldmaps would
result in outputs being under-unwarped. To fix all of these, TOPUP (if PEPOLAR fieldmaps are
being used) and eddy occur in LAS+, then their outputs are converted to LPS+ for GRE fieldmaps,
SyN. The rest of the pipeline happens in LPS+, like the SHORELine version.

* Update installation method to match fMRIPrep
* Add CI tests for reconstruction workflows
* Make the ``--sloppy`` option affect the reconstruction workflows
* Fixes bug in 3dSHORE reconstruction (incorrect scaling)
* CRITICAL bug fix: convert everything to LAS+ if eddy is going to be used
* Added built-in reconstruction workflows
* Added Brainnetome, AICHA and the remaining Schaefer atlases

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* Address issues in Nipype causing random crashes

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* Use antsMultiVariateTemplateConstruction2.sh to make a b=0 template across scan groups
* Control the number of template iterations and deformation model with
``--intramodal_template_iters`` and ``--intramodal_template_transform``.

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* More documentation updates
* MSD calculated for MAPMRI