Pyfaidx

Latest version: v0.8.1.1

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0.5.1

- Spliced sequence retrieval 127 (Thanks simonvh)

0.5.0.1

- Removed BGZF warning (123) since the test suite contains good coverage of this feature.

0.5.0

- coordinates with start > end can be auto reverse complemented using `--auto-strand` argument (120)
- `--no-coords` flag in `faidx` script suppresses "sequence:start-end" in output sequence headers (121)
- `Sequence.long_name` is deprecated in favor of `Sequence.fancy_name`. `Sequence.longname()` is now removed from the codebase after previous DeprecationWarnings.

0.4.9.2

- Fixed issue in `key_function` validation logic

0.4.9.1

- Faster `faidx -i nucleotide` code

0.4.9

- Support for resolving duplicate keys using `duplicate_action` argument to `Fasta`
- Support for BGZF (block gzip compressed) FASTA files (77) (Thanks terrycojones!)
- Support for numpy 32bit and 64bit integer comparisons (114)
- Better file locking and buffer flushing (110)

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