Phydms

Latest version: v2.4.1

Safety actively analyzes 631249 Python packages for vulnerabilities to keep your Python projects secure.

Scan your dependencies

Page 4 of 7

2.1.1

---------
* Altered ``setup.py`` to enable installation without ``numpy`` being pre-installed.

2.1.0

---------
* Added ``--gammabeta`` option to ``phydms``

* Added ``ExpCM`` with ``divpressure`` to ``simulate.py``.

* Updated citation

* Fixed bug in ``simulate.py`` that caused incorrect branch length scalings

* Change installation recommendations

* Fixed installation of ``cython`` extensions.

2.0.5

---------
* Added ``--opt_details`` argument to ``phydms``

* Tweak to likelihood optimization convergence tests

2.0.4

---------
* Minor tweaks to `phydmslib.simulate`

* Fixed rare bug in likelihood optimization that caused nothing to be optimized

2.0.3

---------
* Changes to reduce problems with convergence in ``--diffprefsbysite``

2.0.2

---------
* Added new simulation capabilities to `phydmslib.simulate`

* Added ``--initparams`` option to ``phydms``

* Modified ``--omegabysite`` fitting to reduce (hopefully eliminate) rare errors

Page 4 of 7

© 2024 Safety CLI Cybersecurity Inc. All Rights Reserved.