Photutils

Latest version: v1.12.0

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0.3

----------------

New Features
^^^^^^^^^^^^

- ``photutils.aperture``

- Added new ``origin`` keyword to aperture ``plot`` methods. [395]

- Added new ``id`` column to ``aperture_photometry`` output table. [446]

- Added ``__len__`` method for aperture classes. [446]

- Added new ``to_mask`` method to ``PixelAperture`` classes. [453]

- Added new ``ApertureMask`` class to generate masks from apertures.
[453]

- Added new ``mask_area()`` method to ``PixelAperture`` classes.
[453]

- The ``aperture_photometry()`` function now accepts a list of
aperture objects. [454]

- ``photutils.background``

- Added new ``MeanBackground``, ``MedianBackground``,
``MMMBackground``, ``SExtractorBackground``,
``BiweightLocationBackground``, ``StdBackgroundRMS``,
``MADStdBackgroundRMS``, and ``BiweightMidvarianceBackgroundRMS``
classes. [370]

- Added ``axis`` keyword to new background classes. [392]

- Added new ``removed_masked``, ``meshpix_threshold``, and
``edge_method`` keywords for the 2D background classes. [355]

- Added new ``std_blocksum`` function. [355]

- Added new ``SigmaClip`` class. [423]

- Added new ``BkgZoomInterpolator`` and ``BkgIDWInterpolator``
classes. [437]

- ``photutils.datasets``

- Added ``load_irac_psf`` function. [403]

- ``photutils.detection``

- Added new ``make_source_mask`` convenience function. [355]

- Added ``filter_data`` function. [398]

- Added ``DAOStarFinder`` and ``IRAFStarFinder`` as OOP interfaces for
``daofind`` and ``irafstarfinder``, respectively, which are now
deprecated. [379]

- ``photutils.psf``

- Added ``BasicPSFPhotometry``, ``IterativelySubtractedPSFPhotometry``, and
``DAOPhotPSFPhotometry`` classes to perform PSF photometry in
crowded fields. [427]

- Added ``DAOGroup`` and ``DBSCANGroup`` classes for grouping overlapping
sources. [369]

- ``photutils.psf_match``

- Added ``create_matching_kernel`` and ``resize_psf`` functions. Also,
added ``CosineBellWindow``, ``HanningWindow``,
``SplitCosineBellWindow``, ``TopHatWindow``, and ``TukeyWindow``
classes. [403]

- ``photutils.segmentation``

- Created new ``photutils.segmentation`` subpackage. [442]

- Added ``copy`` and ``area`` methods and an ``areas`` property to
``SegmentationImage``. [331]

API Changes
^^^^^^^^^^^

- ``photutils.aperture``

- Removed the ``effective_gain`` keyword from
``aperture_photometry``. Users must now input the total error,
which can be calculated using the ``calc_total_error`` function.
[368]

- ``aperture_photometry`` now outputs a ``QTable``. [446]

- Renamed ``source_id`` keyword to ``indices`` in the aperture
``plot()`` method. [453]

- Added ``mask`` and ``unit`` keywords to aperture
``do_photometry()`` methods. [453]

- ``photutils.background``

- For the background classes, the ``filter_shape`` keyword was
renamed to ``filter_size``. The ``background_low_res`` and
``background_rms_low_res`` class attributes were renamed to
``background_mesh`` and ``background_rms_mesh``, respectively.
[355, 437]

- The ``Background2D`` ``method`` and ``backfunc`` keywords have
been removed. In its place one can input callable objects via the
``sigma_clip``, ``bkg_estimator``, and ``bkgrms_estimator``
keywords. [437]

- The interpolator to be used by the ``Background2D`` class can be
input as a callable object via the new ``interpolator`` keyword.
[437]

- ``photutils.centroids``

- Created ``photutils.centroids`` subpackage, which contains the
``centroid_com``, ``centroid_1dg``, and ``centroid_2dg``
functions. These functions now return a two-element numpy
ndarray. [428]

- ``photutils.detection``

- Changed finding algorithm implementations (``daofind`` and
``starfind``) from functional to object-oriented style. Deprecated
old style. [379]

- ``photutils.morphology``

- Created ``photutils.morphology`` subpackage. [428]

- Removed ``marginalize_data2d`` function. [428]

- Moved ``cutout_footprint`` from ``photutils.morphology`` to
``photutils.utils``. [428]

- Added a function to calculate the Gini coefficient (``gini``).
[343]

- ``photutils.psf``

- Removed the ``effective_gain`` keyword from ``psf_photometry``.
Users must now input the total error, which can be calculated
using the ``calc_total_error`` function. [368]

- ``photutils.segmentation``

- Removed the ``effective_gain`` keyword from ``SourceProperties``
and ``source_properties``. Users must now input the total error,
which can be calculated using the ``calc_total_error`` function.
[368]

- ``photutils.utils``

- Renamed ``calculate_total_error`` to ``calc_total_error``. [368]

Bug Fixes
^^^^^^^^^

- ``photutils.aperture``

- Fixed a bug in ``aperture_photometry`` so that single-row output
tables do not return a multidimensional column. [446]

- ``photutils.centroids``

- Fixed a bug in ``centroid_1dg`` and ``centroid_2dg`` that occurred
when the input data contained invalid (NaN or inf) values. [428]

- ``photutils.segmentation``

- Fixed a bug in ``SourceProperties`` where ``error`` and
``background`` units were sometimes dropped. [441]

0.2.2

------------------

General
^^^^^^^

- Dropped numpy 1.6 support. Minimal required version is now numpy
1.7. [327]

- Fixed configparser for Python 3.5. [366, 384]

Bug Fixes
^^^^^^^^^

- ``photutils.detection``

- Fixed an issue to update segmentation image slices after
deblending. [340]

- Fixed source deblending to pass the pixel connectivity to the
watershed algorithm. [347]

- SegmentationImage properties are now cached instead of recalculated,
which significantly improves performance. [361]

- ``photutils.utils``

- Fixed a bug in ``pixel_to_icrs_coords`` where the incorrect pixel
origin was being passed. [348]

0.2.1

------------------

Bug Fixes
^^^^^^^^^

- ``photutils.background``

- Added more robust version checking of Astropy. [318]

- ``photutils.detection``

- Added more robust version checking of Astropy. [318]

- ``photutils.segmentation``

- Fixed issue where ``SegmentationImage`` slices were not being updated.
[317]

- Added more robust version checking of scikit-image. [318]

0.2

----------------

General
^^^^^^^

- Photutils has the following requirements:

- Python 2.7 or 3.3 or later

- Numpy 1.6 or later

- Astropy v1.0 or later

New Features
^^^^^^^^^^^^

- ``photutils.detection``

- ``find_peaks`` now returns an Astropy Table containing the (x, y)
positions and peak values. [240]

- ``find_peaks`` has new ``mask``, ``error``, ``wcs`` and ``subpixel``
precision options. [244]

- ``detect_sources`` will now issue a warning if the filter kernel
is not normalized to 1. [298]

- Added new ``deblend_sources`` function, an experimental source
deblender. [314]

- ``photutils.morphology``

- Added new ``GaussianConst2D`` (2D Gaussian plus a constant) model.
[244]

- Added new ``marginalize_data2d`` function. [244]

- Added new ``cutout_footprint`` function. [244]

- ``photutils.segmentation``

- Added new ``SegmentationImage`` class. [306]

- Added new ``check_label``, ``keep_labels``, and ``outline_segments``
methods for modifying ``SegmentationImage``. [306]

- ``photutils.utils``

- Added new ``random_cmap`` function to generate a colormap comprised
of random colors. [299]

- Added new ``ShepardIDWInterpolator`` class to perform Inverse
Distance Weighted (IDW) interpolation. [307]

- The ``interpolate_masked_data`` function can now interpolate
higher-dimensional data. [310]

API Changes
^^^^^^^^^^^

- ``photutils.segmentation``

- The ``relabel_sequential``, ``relabel_segments``,
``remove_segments``, ``remove_border_segments``, and
``remove_masked_segments`` functions are now ``SegmentationImage``
methods (with slightly different names). [306]

- The ``SegmentProperties`` class has been renamed to
``SourceProperties``. Likewise, the ``segment_properties``
function has been renamed to ``source_properties``. [306]

- The ``segment_sum`` and ``segment_sum_err`` attributes have been
renamed to ``source_sum`` and ``source_sum_err``, respectively. [306]

- The ``background_atcentroid`` attribute has been renamed to
``background_at_centroid``. [306]

Bug Fixes
^^^^^^^^^

- ``photutils.aperture``

- Fixed an issue where ``np.nan`` or ``np.inf`` were not properly
masked. [267]

- ``photutils.geometry``

- ``overlap_area_triangle_unit_circle`` handles correctly a corner case
in some i386 systems where the area of the aperture was not computed
correctly. [242]

- ``rectangular_overlap_grid`` and ``elliptical_overlap_grid`` fixes to
normalization of subsampled pixels. [265]

- ``overlap_area_triangle_unit_circle`` handles correctly the case where
a line segment intersects at a triangle vertex. [277]

Other Changes and Additions
^^^^^^^^^^^^^^^^^^^^^^^^^^^

- Updated astropy-helpers to v1.1. [302]

0.1

version 0.4 or later.

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