Ngsderive

Feature
* Handle case of BAM without RG tag ([100](https://github.com/stjudecloud/ngsderive/issues/100)) ([`4436abf`](https://github.com/stjudecloud/ngsderive/commit/4436abf70540a33b1825deba3c8b0b499b93bbc5))

Fix
* Revert "feat: junction-saturation (16)" ([110](https://github.com/stjudecloud/ngsderive/issues/110)) ([`9262af0`](https://github.com/stjudecloud/ngsderive/commit/9262af0d8290e3f1ae70ba47b58fbea9b9c15d35))

Feature
* Junction-saturation ([16](https://github.com/stjudecloud/ngsderive/issues/16)) ([`e4811e7`](https://github.com/stjudecloud/ngsderive/commit/e4811e73e2164dd8f6150d6f3ae2f0f6a8af2f99))

Feature
* **junction-annotation:** By default discard unannotated contigs ([96](https://github.com/stjudecloud/ngsderive/issues/96)) ([`d2f2e18`](https://github.com/stjudecloud/ngsderive/commit/d2f2e18338656da53e2d6d8c74f2a48850a1f125))
* Adds Dockerfile ([97](https://github.com/stjudecloud/ngsderive/issues/97)) ([`26242b2`](https://github.com/stjudecloud/ngsderive/commit/26242b27fe2d73e2413f872a61496cffca3922f2))

Breaking
* Always annotate as `unannotated_reference` in the junctions file. By default, exclude from the summary report. With flag, call them "novel" in the summary ([`d2f2e18`](https://github.com/stjudecloud/ngsderive/commit/d2f2e18338656da53e2d6d8c74f2a48850a1f125))

Fix
* Set default `n-genes` to 1000 for improved accuracy ([`914525d`](https://github.com/stjudecloud/ngsderive/commit/914525da2449ad6588c1518287a9b73cc91cf9d4))

Feature
* Make retries cumulative instead of a reset ([91](https://github.com/stjudecloud/ngsderive/issues/91)) ([`72c7b0f`](https://github.com/stjudecloud/ngsderive/commit/72c7b0fca9c72b4caafb307451ff3b1c08c671bc))

Documentation
* Clarify other important improvement regarding disambiguation of… ([15](https://github.com/stjudecloud/ngsderive/issues/15)) ([`5d58156`](https://github.com/stjudecloud/ngsderive/commit/5d58156f79ddf57f8d0518bc45745e923d8f4c04))
* Refactor to exclude junction-annotation from "best guess" notice ([13](https://github.com/stjudecloud/ngsderive/issues/13)) ([`c8e208e`](https://github.com/stjudecloud/ngsderive/commit/c8e208e2edf4c8d81fb5cddc322b38a5acc57a44))