Mriqc

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* ENH: Finished setting up `MRIQC Web API <https://mriqc.nimh.nih.gov>`_
* ENH: Better error message when --participant_label is set (`542 <https://github.com/nipreps/mriqc/pull/542>`__)
* FIX: Allow --load-classifier option to be empty in mriqc_clf (`544 <https://github.com/nipreps/mriqc/pull/544>`__)
* FIX: Borked bias estimation derived from Conform (`541 <https://github.com/nipreps/mriqc/pull/541>`__)
* ENH: Test against web API 0.3.2 (`540 <https://github.com/nipreps/mriqc/pull/540>`__)
* ENH: Change the default Web API address (`539 <https://github.com/nipreps/mriqc/pull/539>`__)
* ENH: MRIQCWebAPI: hash fields that may have PI (`538 <https://github.com/nipreps/mriqc/pull/538>`__)
* ENH: Added token authorization to MRIQCWebAPI client (`535 <https://github.com/nipreps/mriqc/pull/535>`__)
* FIX: Do not mask and antsAffineInitializer twice (`534 <https://github.com/nipreps/mriqc/pull/534>`__)
* FIX: Datasets where air (hat) mask is empty (`533 <https://github.com/nipreps/mriqc/pull/533>`__)
* ENH: Integration testing for MRIQCWebAPI (`520 <https://github.com/nipreps/mriqc/pull/520>`__)
* ENH: Use AFNI to calculate gcor (`531 <https://github.com/nipreps/mriqc/pull/531>`__)
* ENH: Refactor derivatives (`530 <https://github.com/nipreps/mriqc/pull/530>`__)
* ENH: New bold-IQM: dummy_trs (non-stady state volumes) (`524 <https://github.com/nipreps/mriqc/pull/524>`__)
* FIX: Order of BIDS components in IQMs CSV table (`525 <https://github.com/nipreps/mriqc/pull/525>`__)
* ENH: Improved logging of mriqc_run (`526 <https://github.com/nipreps/mriqc/pull/526>`__)

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* ENH: Refactored structural metrics calculation (`513 <https://github.com/nipreps/mriqc/pull/513>`__)
* ENH: Calculate rotation mask (`515 <https://github.com/nipreps/mriqc/pull/515>`__)
* ENH: Intensity harmonization in the anatomical workflow (`510 <https://github.com/nipreps/mriqc/pull/510>`__)
* ENH: Set N4BiasFieldCorrection number of threads (`506 <https://github.com/nipreps/mriqc/pull/506>`__)
* ENH: Convert FWHM in pixel units (`503 <https://github.com/nipreps/mriqc/pull/503>`__)
* ENH: Add MRIQC client for feature crowdsourcing (`464 <https://github.com/nipreps/mriqc/pull/464>`__)
* DOC: Fix functional feature labels in documentation (docs_only) (`507 <https://github.com/nipreps/mriqc/pull/507>`__)
* FIX: New implementation for the rPVE feature (normalization, left-tail values) (`505 <https://github.com/nipreps/mriqc/pull/505>`__)
* ENH: Parse BIDS selectors (run, task, etc.), improve CLI (`504 <https://github.com/nipreps/mriqc/pull/504>`__)

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* ANNOUNCEMENT: Dropped Python 2 support
* ENH: Use versioneer to handle versions (`500 <https://github.com/nipreps/mriqc/pull/500>`__)
* ENH: Speed up spatial normalization (`495 <https://github.com/nipreps/mriqc/pull/495>`__)
* ENH: Resampling of hat mask and TPMs with linear interp (`498 <https://github.com/nipreps/mriqc/pull/498>`__)
* TST: Build documentation in CircleCI (`484 <https://github.com/nipreps/mriqc/pull/484>`__)
* ENH: Use full-resolution T1w images from ABIDE (`486 <https://github.com/nipreps/mriqc/pull/486>`__)
* TST: Parallelize tests (`493 <https://github.com/nipreps/mriqc/pull/493>`__)
* TST: Binding /etc/localtime stopped working in docker 1.9.1 (`492 <https://github.com/nipreps/mriqc/pull/492>`__)
* TST: Downgrade docker to 1.9.1 in circle (build_only) (`491 <https://github.com/nipreps/mriqc/pull/491>`__)
* TST: Check for changes in intermediate nifti files (`485 <https://github.com/nipreps/mriqc/pull/485>`__)
* FIX: Erroneous flag --n_proc in CircleCI (`490 <https://github.com/nipreps/mriqc/pull/490>`__)
* ENH: Add build_only tag to circle builds (`488 <https://github.com/nipreps/mriqc/pull/488>`__)
* ENH: Update Dockerfile (`482 <https://github.com/nipreps/mriqc/pull/482>`__)
* FIX: Ignore --profile flag with Linear plugin (`483 <https://github.com/nipreps/mriqc/pull/483>`__)
* DOC: Deep revision of the documentation (`479 <https://github.com/nipreps/mriqc/pull/479>`__)
* ENH: Minor improvements: SpatialNormalization and segmentation (`472 <https://github.com/nipreps/mriqc/pull/472>`__)
* ENH: Fixed typo for neurodebian install via apt-get (`478 <https://github.com/nipreps/mriqc/pull/478>`__)
* ENH: Updating fs2gif script (`465 <https://github.com/nipreps/mriqc/pull/465>`__)
* ENH: RF: Use niworkflows.interface.SimpleInterface (`468 <https://github.com/nipreps/mriqc/pull/468>`__)
* ENH: Add reproducibility of metrics tracking (`466 <https://github.com/nipreps/mriqc/pull/466>`__)

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* ENH: Reafactor of the Dockerfile to improve transparency, reduce size, and enable injecting code in Singularity (`457 <https://github.com/nipreps/mriqc/pull/457>`__)
* ENH: Make more the memory consumption estimates of each processing step more conservative to improve robustness (`456 <https://github.com/nipreps/mriqc/pull/456>`__)
* FIX: Minor documentation cleanups (`461 <https://github.com/nipreps/mriqc/pull/461>`__)

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* ENH: Optional ICA reports for identifying spatiotemporal artifacts (`412 <https://github.com/nipreps/mriqc/pull/412>`__)
* ENH: Add --profile flag (`435 <https://github.com/nipreps/mriqc/pull/435>`__)
* ENH: Crashfiles are saved in plain text to improve portability (`434 <https://github.com/nipreps/mriqc/pull/434>`__)
* FIX: Fixes EPI mask erosion (`442 <https://github.com/nipreps/mriqc/pull/442>`__)
* ENH: Make FSL and AFNI motion correction more comparable by using the same scheme for defining the reference image (`444 <https://github.com/nipreps/mriqc/pull/444>`__)
* FIX: Temporarily disabling T1w quality classifier until it can be retrained on new measures (`447 <https://github.com/nipreps/mriqc/pull/447>`__)

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* ENH: Revise Docker paths (`429 <https://github.com/nipreps/mriqc/pull/429>`__)
* FIX: Greedy participant selection (`426 <https://github.com/nipreps/mriqc/pull/426>`__)
* FIX: Pin pybids to new version 0.1.0 (`427 <https://github.com/nipreps/mriqc/pull/427>`__)
* FIX: Amends sloppy PR 425 (`428 <https://github.com/nipreps/mriqc/pull/428>`__)