Mriqc

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0.10.2

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* ENH: Add warning about mounting relative paths (`690 <https://github.com/nipreps/mriqc/pull/690>`__)
* FIX: Sanitize inputs (`687 <https://github.com/nipreps/mriqc/pull/687>`__)
* DOC: Fix documentation to use ``--version`` instead of ``-v`` (`688 <https://github.com/nipreps/mriqc/pull/688>`__)

0.10.1

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* FIX: Fixed a bug in reading outputs of ``3dFWHMx`` (`678 <https://github.com/nipreps/mriqc/pull/678>`__)

0.9.10

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* FIX: Updated AFNI to 17.3.03. Resolves errors regarding opening display by ``3dSkullStrip`` (`669 <https://github.com/nipreps/mriqc/pull/669>`__)

0.9.9

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* ENH: Update nipype to fix ``$DISPLAY`` problem of AFNI's ``3dSkullStrip``

0.9.8

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With thanks to Jan Varada (jvarada) for the session/run filtering.

* ENH: Report recall in cross-validation (requested by reviewer) (`633 <https://github.com/nipreps/mriqc/pull/633>`__)
* ENH: Hotfixes to 0.9.7 (`635 <https://github.com/nipreps/mriqc/pull/635>`__)
* FIX: Implement filters for session, run and task of BIDS input (`612 <https://github.com/nipreps/mriqc/pull/612>`__)

0.9.7

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* ENH: Clip outliers in FD and SPIKES group plots (`593 <https://github.com/nipreps/mriqc/pull/593>`__)
* ENH: Second revision of the classifier (`555 <https://github.com/nipreps/mriqc/pull/555>`__):
* Set matplotlib plugin to `agg` in docker image
* Migrate scalings to sklearn pipelining system
* Add Satra's feature selection for RFC (with thanks to S. Ghosh for his suggestion)
* Make model selection compatible with sklearn `Pipeline`
* Multiclass classification
* Add feature selection filter based on Sites prediction (requires pinning to development sklearn-0.19)
* Add `RobustLeavePGroupsOut`, replace `RobustGridSearchCV` with the standard `GridSearchCV` of sklearn.
* Choice between `RepeatedStratifiedKFold` and `RobustLeavePGroupsOut` in `mriqc_clf`
* Write cross-validation results to an `.npz` file.
* ENH: First revision of the classifier (`553 <https://github.com/nipreps/mriqc/pull/553>`__):
* Add the possibility of changing the scorer function.
* Unifize labels for raters in data tables (to `rater_1`)
* Add the possibility of setting a custom decision threshold
* Write the probabilities in the prediction file
* Revised `mriqc_clf` processing flow
* Revised labels file for ds030.
* Add IQMs for ABIDE and DS030 calculated with MRIQC 0.9.6.
* ANNOUNCEMENT: Dropped support for Python<-3.4
* WARNING (`596 <https://github.com/nipreps/mriqc/pull/596>`__):
We have changed the default number of threads for ANTs. Using parallelism with ANTs
causes numerical instability on the calculated measures. The most sensitive metrics to this
problem are the kurtosis calculations on the intensities of regions and qi_2.

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