Moa

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* added a few map derivates (map2, map22)
* moa.ui prompt now expands paths starting with /
* plugin to maintain project data ( {{_p}} )
* make sure the pluginOrder is copied before sorting - otherwise order is messed up
* safeguard for unsolvable configurations
* cleaned the order of execution a little bit - added prePrepare and postFinish
* do not run the git_finish_* hook if not in a git repository
* better handling of non writable .moa dirs

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* improved docs
* moa ! works again
* moaGit works a lot better now
* Allows variables to be injected into a job configuration based on a oneliner
* Lots of templates now use Ruff
* Many improvements in the templates
* Basic archiving of jobs
* added alias msp / moa set process
* added a umask plugin
* Improved bash prompt interaction
* automatic registering of job in sysConf
* renamed jobId to runId
* tried to get command completion integrated ... did not work
* defactoring reduce code
* Fixed reused of ruffus object (old bug)
* improving & organizing prepare/run/finish structure of jobs
* lots of cleaning
* Preliminary version of an SGE plugin
* Better implementation of finish/prepare calls
* remove delegate
* Accepts jinja rendered configuration now
* improved tab completion - uses jinja2 expansion
* --bg is now properly silent
* display expanded variables in "moa show"
* prevent jinja expansion of 'process' parameter
* Handles rendered job parameters
* each plugin now has its own directory
* Refactored plugin structure
* Converted a number of functions to the new hook_ structure
* some general information for setup.py
* unittest2 based testing

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* Improved templates
* Forcing bin/moa to python2.6
* Resolving maps to single filesets (fist)
* Improved moa show, moa files, moa tree output
* Improved the output of moa files
* started moving web code to the plugins
* Allowing seperate template files for commands
* Template dealing with hagfish
* Improved documentation handling
* Allow simple jobs to access job data

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* produce a graceful message on trying to instantiate an unknown template
* working on docs
* store status in sysConf
* allow jobs to be instantiated from other locations as pwd
* plugin to send mail after competing a job
* improved tree display
* define ansi colors in the config file

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* jinja2 version of the ncbi template
* recursively defined variables are adapted if they appear to be
a relative path
* rearranged plugin management
* many small fixes improving recursive & multithreaded operation
* implementation of ruff.reduce
* moved bowtiedb template to a reduce type operation
* clear ruffus node log - make sure it starts fresh for each job

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* fixed all unittests
* removed ruffus logging
* improved docs
* cleaning up
* removed a bug that prevented running ruffus twice (in the case of
-r) - refreshing ruffus before each run
* improved output
* more ansii colors
* moa show now shows if a variable is defined by a parent
(recursively) [19 state:resolved]