* Add options to apply SNP filter on allc files using filter-allc * Add multiprocess option in filter-allc * Add merge snp information option in merge-allc * Change the default of --min-mapq to 30 * Minor bug fixed
1.1.9
Fix bug regarding to --add-snp-info
1.1.8
* fix bug regarding --add-snp-info * add --min-mapq option to filter out reads with low mapping quality
1.1.7
Fix bin_size issue in --allc-to-bigwig
1.1.6
Fix issue in counting unconverted and converted basecalls when indel is present
add option `--add-snp-info` to include two additional columns in allc files to reflect genotype information
1.1.5
Fix bugs when methylpy processes reads over 250bp long