New Features
- cnvnator support
- breakseq vcf support
Improvements
- masking, dgv_annotation, and template_metadata files are now all optional
- Moved optional dependencies from the install_requires to tests_require and extras_require to improve setup
- Additional documentation and reorganization of the user manual
- Moved the complexity filtering to the summary stage
BugFixes
- Hard clipped read error during read alignment to contig
- vcf input option error where it was not being properly added to the supported tools