BugFixes - Documentation: Update links to old docs to use new RTD links - Documentation: Make sure column and settings files are generated when RTD builds the docs - write logs when jobs fail running in local mode
Improvements - 234 add better error message for mavis not found on path
2.2.8
BugFixes
* 227 fix_mismatched_annotation
Improvements
* Updating docs * Updates to the ensembl json script
2.2.7
BugFixes - 213 (VCF): Allow non-translocations to use BND syntax for inputs. Infer break1 orientation from BND alt notation
Improvements - Use separate submodules for tool conversion code - lint with black
2.2.6
BugFixes
189 Fix clustering bug by shifting start of second breakpoint for intra-chromosomal breakpoint merges 195 BugFix from the 2.2.5 release where these were defaulted to strings instead of arrays
Features
Update readthedocs configuration Add python3.7 to the tox and travis configs Update the contributor directions
2.2.5
BugFixes
188 Allow numeric values for JSON annotations file strand values Features
188 Add option to include non-coding transcripts in the annotations file
2.2.4
Bugfixes:
185 186 Fixing OpenBlas issue by explicitly setting the number of threads when numpy is imported.