Illumina-utils

Latest version: v2.13

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2.1

2.0.2

Minor bug fixes.

2.0.1

1.4.2

Apart from a couple of bug fixes we have two major changes in this release:
- It seems Illumina has changed the default tile numbers. With this release the code learns tile numbers from the files, so `--visualize-qual-dicts` with Bokulich or Minoche filters continue generating plots with NextSeq platform as well (for which we no longer generate very very large TIFF files and go with PNG file format).
- There are two new parameters both for `iu-filter-quality-bokulich` and `iu-filter-quality-minoche`: `--limit-num-pairs` (so one can test the code very fast by saying "analyze X number of reads and stop") and `--print-qual-scores` (which is very helpful to see what the code sees in these FASTQ files as Illumina seems to change how to report these scores).

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