Ecell

- Update hdf5 version for Windows
- Adding pickle support for ODENetworkModel 128
- Adding longer serial support for Species in HDF5 146

- Adding the datasource module to
- Adding Python3 64bit support for Windows
- Adding ensemble_simulations to run_simulation
- Fix CellList index
- Fix Integer3 operators
- Improvement in CMake build script

Changes
- We started to upload the E-Cell wheel files to [PyPI](https://pypi.python.org/pypi/ecell). Now you can install E-Cell4 with `pip install ecell` !
- 132

Bug fix
- 127
- 130

Enhancement
- Progressbar on Jupyter Notebook 105
- Better styles for visualization especially for matplotlib 79
- A member function to distinguish Species for molecules and structures 102
- Enable user-defined macros for Python decorators 59
- Enable to save a movie as mp4 85
- Enable to set tolerances for ODE through a Factory class 97
- 2D visualization of 3D world for animation 95
- getVelocity for ODE simulation 96
- Implicit dissolution of bindings in the rule-based modeling 113
- Higher resolution for plot_movie 110
- Enable to save time course data of NumberObservers 109
- FixedIntervalTrajectoryObserver should have its small interval to check the periodic boundary effect separately from logging interval 93
- Convenient functions for declaring fundamental objects 90
- Enable to set ranges to show trajectories on viz.plot_trajectory 82

Bug fix
- Fixed kernel death that would occur when there is no species in the viz.plot_movie_with_matplotlib(..., species_list) 104
- Implement egfrd::World::list_species() 118
- Spatiocyte doesn't accept the second-order reaction with translocation 124
- Wrong absorption rate for mesoscopic simulations 103

Features added
- Spatial Gillespie simulator
- Spatiocyte simulator
- eGFRD simulator
- Python-valid rule-based modeling
- Jupyter Notebook inline visualization

HDF5 is optional in beta2.
(Attached binaries do NOT require HDF5 lib.)