Dandi

🚀 Enhancement

- `dandi download dandi://…/dandiset.yaml` now downloads `dandiset.yaml` [1384](https://github.com/dandi/dandi-cli/pull/1384) ([jwodder](https://github.com/jwodder))

🐛 Bug Fix

- Double-check file sizes before & after uploading [1374](https://github.com/dandi/dandi-cli/pull/1374) ([jwodder](https://github.com/jwodder))

🏠 Internal

- Adopt `dandischema.digests.zarr.get_checksum()` to dandi-cli: use zarr_checksum library constructs instead of copies in dandischema [1371](https://github.com/dandi/dandi-cli/pull/1371) ([jwodder](https://github.com/jwodder))
- [gh-actions](deps): Bump github/codeql-action from 2 to 3 [1379](https://github.com/dandi/dandi-cli/pull/1379) ([dependabot[bot]](https://github.com/dependabot[bot]))

📝 Documentation

- Minor codespell fix in a CHANGELOG entry [1389](https://github.com/dandi/dandi-cli/pull/1389) ([yarikoptic](https://github.com/yarikoptic))
- Minor update to `organize` docstring [1382](https://github.com/dandi/dandi-cli/pull/1382) ([kabilar](https://github.com/kabilar))
- Minor docs update for `dandi validate` [1377](https://github.com/dandi/dandi-cli/pull/1377) ([kabilar](https://github.com/kabilar))

🧪 Tests

- Fix service script tests for change in autogenerated date [1385](https://github.com/dandi/dandi-cli/pull/1385) ([jwodder](https://github.com/jwodder))

Authors: 4

- [dependabot[bot]](https://github.com/dependabot[bot])
- John T. Wodder II ([jwodder](https://github.com/jwodder))
- Kabilar Gunalan ([kabilar](https://github.com/kabilar))
- Yaroslav Halchenko ([yarikoptic](https://github.com/yarikoptic))

---

🐛 Bug Fix

- Properly open filehandles for `RemoteReadableAsset`s [1376](https://github.com/dandi/dandi-cli/pull/1376) ([jwodder](https://github.com/jwodder))
- Repeatedly double-check return values of zero when spying on `super_len()` [1370](https://github.com/dandi/dandi-cli/pull/1370) ([jwodder](https://github.com/jwodder))
- Set 30-second connect & read timeout when downloading files [1369](https://github.com/dandi/dandi-cli/pull/1369) ([jwodder](https://github.com/jwodder))

🏠 Internal

- [gh-actions](deps): Bump actions/setup-python from 4 to 5 [1372](https://github.com/dandi/dandi-cli/pull/1372) ([dependabot[bot]](https://github.com/dependabot[bot]))
- Remove redundant `ensure_datetime()` call [1367](https://github.com/dandi/dandi-cli/pull/1367) ([jwodder](https://github.com/jwodder))
- Move imports in functions to top level or annotate why they can't be moved [1368](https://github.com/dandi/dandi-cli/pull/1368) ([jwodder](https://github.com/jwodder))

Authors: 2

- [dependabot[bot]](https://github.com/dependabot[bot])
- John T. Wodder II ([jwodder](https://github.com/jwodder))

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🐛 Bug Fix

- Add Python 3.12 to supported versions and test against on GitHub Actions; upgrade versioneer [1330](https://github.com/dandi/dandi-cli/pull/1330) ([yarikoptic](https://github.com/yarikoptic))
- Minor fix for an occasional typo in a comment introduced recently [1357](https://github.com/dandi/dandi-cli/pull/1357) ([yarikoptic](https://github.com/yarikoptic))
- Replace magic string arguments with enums [1357](https://github.com/dandi/dandi-cli/pull/1357) ([jwodder](https://github.com/jwodder))
- Merge duplicate entries in species_map [1358](https://github.com/dandi/dandi-cli/pull/1358) ([garrettmflynn](https://github.com/garrettmflynn))
- Sanitize spaces and ,s in organized filenames [1351](https://github.com/dandi/dandi-cli/pull/1351) ([yarikoptic](https://github.com/yarikoptic))

🏠 Internal

- Remove unused configuration settings [1346](https://github.com/dandi/dandi-cli/pull/1346) ([jwodder](https://github.com/jwodder))
- find_files: Simplify check for VCS and DataLad paths [1355](https://github.com/dandi/dandi-cli/pull/1355) ([jwodder](https://github.com/jwodder))
- Convert dandiarchive URL classes from pydantic models to dataclasses [1356](https://github.com/dandi/dandi-cli/pull/1356) ([jwodder](https://github.com/jwodder))
- Replace `_pytest` imports with modern `pytest` imports [1347](https://github.com/dandi/dandi-cli/pull/1347) ([jwodder](https://github.com/jwodder))
- Remove `_order_` attribute from `Severity` enum [1348](https://github.com/dandi/dandi-cli/pull/1348) ([jwodder](https://github.com/jwodder))
- Use dataclass instead of `auto_repr` [1349](https://github.com/dandi/dandi-cli/pull/1349) ([jwodder](https://github.com/jwodder))
- Run `pyupgrade --py38-plus` on source [1350](https://github.com/dandi/dandi-cli/pull/1350) ([jwodder](https://github.com/jwodder))
- Modernize type annotations and improve mypy config [1343](https://github.com/dandi/dandi-cli/pull/1343) ([jwodder](https://github.com/jwodder))
- Move words ignored by codespell from `.codespellignore` to `setup.cfg` [1344](https://github.com/dandi/dandi-cli/pull/1344) ([jwodder](https://github.com/jwodder))

🧪 Tests

- Install also hdmf from git in the dev-deps CI run [1320](https://github.com/dandi/dandi-cli/pull/1320) ([yarikoptic](https://github.com/yarikoptic))
- Fix typing error [1359](https://github.com/dandi/dandi-cli/pull/1359) ([jwodder](https://github.com/jwodder))

🔩 Dependency Updates

- Update for `zarr_checksum` 0.2.12 [1365](https://github.com/dandi/dandi-cli/pull/1365) ([jwodder](https://github.com/jwodder))
- Replace appdirs with platformdirs [1345](https://github.com/dandi/dandi-cli/pull/1345) ([jwodder](https://github.com/jwodder))

Authors: 3

- Garrett Michael Flynn ([garrettmflynn](https://github.com/garrettmflynn))
- John T. Wodder II ([jwodder](https://github.com/jwodder))
- Yaroslav Halchenko ([yarikoptic](https://github.com/yarikoptic))

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🚀 Enhancement

- Expose number of jobs to organize [1341](https://github.com/dandi/dandi-cli/pull/1341) ([CodyCBakerPhD](https://github.com/CodyCBakerPhD))

🧪 Tests

- Don't use buggy version of `responses` [1342](https://github.com/dandi/dandi-cli/pull/1342) ([jwodder](https://github.com/jwodder))

Authors: 2

- Cody Baker ([CodyCBakerPhD](https://github.com/CodyCBakerPhD))
- John T. Wodder II ([jwodder](https://github.com/jwodder))

---

🚀 Enhancement

- `?location` parameter in URLs can only point to a folder [1305](https://github.com/dandi/dandi-cli/pull/1305) ([yarikoptic](https://github.com/yarikoptic) [jwodder](https://github.com/jwodder))

🐛 Bug Fix

- Add missing term in ETA calculation [1340](https://github.com/dandi/dandi-cli/pull/1340) ([sneakers-the-rat](https://github.com/sneakers-the-rat))

🏠 Internal

- typing: Account for the fact that requests.HTTPError .response might be None now [1336](https://github.com/dandi/dandi-cli/pull/1336) ([yarikoptic](https://github.com/yarikoptic))
- [gh-actions](deps): Bump actions/checkout from 3 to 4 [1326](https://github.com/dandi/dandi-cli/pull/1326) ([dependabot[bot]](https://github.com/dependabot[bot]))
- codespell: tuneup of config and some new typos detected fixes [1334](https://github.com/dandi/dandi-cli/pull/1334) ([yarikoptic](https://github.com/yarikoptic))

📝 Documentation

- Minor documentation tune up [1338](https://github.com/dandi/dandi-cli/pull/1338) ([yarikoptic](https://github.com/yarikoptic))

🧪 Tests

- Re-record VCR tapes using newer versions of libraries [1337](https://github.com/dandi/dandi-cli/pull/1337) ([yarikoptic](https://github.com/yarikoptic))
- Ignore unclosed connection resource warning from VCR [1333](https://github.com/dandi/dandi-cli/pull/1333) ([yarikoptic](https://github.com/yarikoptic))

Authors: 4

- [dependabot[bot]](https://github.com/dependabot[bot])
- John T. Wodder II ([jwodder](https://github.com/jwodder))
- Jonny Saunders ([sneakers-the-rat](https://github.com/sneakers-the-rat))
- Yaroslav Halchenko ([yarikoptic](https://github.com/yarikoptic))

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🐛 Bug Fix

- Fix uploading Zarr within a BIDS dataset; typing-check guided fix for handling requests exception [1331](https://github.com/dandi/dandi-cli/pull/1331) ([yarikoptic](https://github.com/yarikoptic))

Authors: 1

- Yaroslav Halchenko ([yarikoptic](https://github.com/yarikoptic))

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