Dandi

🔩 Dependency Updates

- upgrade dandischema requirement from 0.4.1 to 0.5.1 (~=) [868](https://github.com/dandi/dandi-cli/pull/868) ([yarikoptic](https://github.com/yarikoptic))

Authors: 1

- Yaroslav Halchenko ([yarikoptic](https://github.com/yarikoptic))

---

🚀 Enhancement

- Include "dandiset" field in /uploads/initialize/ requests [863](https://github.com/dandi/dandi-cli/pull/863) ([jwodder](https://github.com/jwodder))

🐛 Bug Fix

- ENH: update species interpretation from NWB file [857](https://github.com/dandi/dandi-cli/pull/857) ([satra](https://github.com/satra))

Authors: 2

- John T. Wodder II ([jwodder](https://github.com/jwodder))
- Satrajit Ghosh ([satra](https://github.com/satra))

---

🚀 Enhancement

- Add `embargo_status` to dandiset endpoint [855](https://github.com/dandi/dandi-cli/pull/855) ([dchiquito](https://github.com/dchiquito))
- Remove dandi/core/ in favor of copy in dandischema [849](https://github.com/dandi/dandi-cli/pull/849) ([jwodder](https://github.com/jwodder))
- Error on NWB files with external links [843](https://github.com/dandi/dandi-cli/pull/843) ([jwodder](https://github.com/jwodder))

🐛 Bug Fix

- Add DJANGO_DANDI_DANDISETS_EMBARGO_BUCKET_NAME setting to test docker-compose.yml [854](https://github.com/dandi/dandi-cli/pull/854) ([dchiquito](https://github.com/dchiquito))

🏠 Internal

- Move a comment [862](https://github.com/dandi/dandi-cli/pull/862) ([jwodder](https://github.com/jwodder))
- Add a wrapper function for the calls to `find_files()` in tests [860](https://github.com/dandi/dandi-cli/pull/860) ([jwodder](https://github.com/jwodder))
- Assorted code cleanups [859](https://github.com/dandi/dandi-cli/pull/859) ([jwodder](https://github.com/jwodder))
- Remove generatorify.py [850](https://github.com/dandi/dandi-cli/pull/850) ([jwodder](https://github.com/jwodder))

📝 Documentation

- Improve CLI documentation [851](https://github.com/dandi/dandi-cli/pull/851) ([jwodder](https://github.com/jwodder))

🧪 Tests

- Replace the use of pyfakefs with a `tmp_home` fixture [861](https://github.com/dandi/dandi-cli/pull/861) ([jwodder](https://github.com/jwodder))

Authors: 2

- Daniel Chiquito ([dchiquito](https://github.com/dchiquito))
- John T. Wodder II ([jwodder](https://github.com/jwodder))

---

🐛 Bug Fix

- Improve UX of failed redirects while resolving resource identifiers [830](https://github.com/dandi/dandi-cli/pull/830) ([jwodder](https://github.com/jwodder))

🏠 Internal

- Remove some unused functions [846](https://github.com/dandi/dandi-cli/pull/846) ([jwodder](https://github.com/jwodder))

🧪 Tests

- Set new environment variables required by API server [845](https://github.com/dandi/dandi-cli/pull/845) ([mvandenburgh](https://github.com/mvandenburgh))
- Test against Python 3.10 [794](https://github.com/dandi/dandi-cli/pull/794) ([jwodder](https://github.com/jwodder))
- Ignore a deprecation warning from humanize [844](https://github.com/dandi/dandi-cli/pull/844) ([jwodder](https://github.com/jwodder))

Authors: 2

- John T. Wodder II ([jwodder](https://github.com/jwodder))
- Mike VanDenburgh ([mvandenburgh](https://github.com/mvandenburgh))

---

🐛 Bug Fix

- Convert DANDI: resource identifiers to lowercase when prepending "https://identifiers.org/" and tighten regex [#829](https://github.com/dandi/dandi-cli/pull/829) ([jwodder](https://github.com/jwodder))

Authors: 1

- John T. Wodder II ([jwodder](https://github.com/jwodder))

---

🚀 Enhancement

- Support setting `--dandi-instance` via a `DANDI_INSTANCE` envvar [822](https://github.com/dandi/dandi-cli/pull/822) ([jwodder](https://github.com/jwodder))
- Give the resource classes `api_url` properties [816](https://github.com/dandi/dandi-cli/pull/816) ([jwodder](https://github.com/jwodder))

🐛 Bug Fix

- Convert metadata 404's when downloading into an "error" status [839](https://github.com/dandi/dandi-cli/pull/839) ([jwodder](https://github.com/jwodder))
- Don't error when redownloading the same dandiset.yaml file [824](https://github.com/dandi/dandi-cli/pull/824) ([jwodder](https://github.com/jwodder))
- Make download fail immediately on nonexistent resources [820](https://github.com/dandi/dandi-cli/pull/820) ([jwodder](https://github.com/jwodder))

🏠 Internal

- Stop using distutils [812](https://github.com/dandi/dandi-cli/pull/812) ([jwodder](https://github.com/jwodder))

📝 Documentation

- Add Read the Docs badge to README [832](https://github.com/dandi/dandi-cli/pull/832) ([jwodder](https://github.com/jwodder))
- Improve `dandi ls --help` and `dandi download --help` output [827](https://github.com/dandi/dandi-cli/pull/827) ([jwodder](https://github.com/jwodder))

Authors: 1

- John T. Wodder II ([jwodder](https://github.com/jwodder))

---