Fixed - Fixes bug where upload_started_at and uploaded_at timestamps were not being updated in StatusDB upon successful Scout upload. This bug was happening because several instances of Store were instantiated in the same context
12.3.3
Not secure
Fixed - Fixes but where linking MIP trio samples only linked the first sample instead of the whole family (Introduced in recent PR) - Fixes bug where linking by SampleID was not linking the entire family (Old) - Fixes bug where linking by SampleID would not be able to generate correct linking path (Old)
[x.x.x] Added
Fixed
Changed
12.3.2
Not secure
Fixed
- Upload delivery report should now only happen for mip analyses - Re-use the same API within all upload context - Handle unspecified exceptions in order to keep the cron running when unexpected exception occurs for one case - When linking file without data analysis set, warn about it and link file correctly
12.3.1
Not secure
Fixed
- Fixed bug where AnalysisAPI in cg upload auto was not updated to recent class changes
12.3.0
Not secure
Changed
- Class ConfigHandler moved from Trailblazer codebase into CG codebase - FastqHandler methods moved from Trailblazer to AnalysisAPI - Merged MipAPI and AnalysisAPI for mip_rna and mip_dna into one meta-api class - Adjusted tests to support the new architecture - Removed (unused/deprecated)run method which was used to execute MIP through Trailblazer
Fixed
- MIP workflow once again performs check to skip evaluation - MIP workflow once again updates StatusDB about the case status