Alphapept

Latest version: v0.5.3

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0.5.2

* FIX FragPipe import 173

0.5.1

* ENH increase limit uplaod size in GUI

0.5.0

* ADD plot Sample Distribution Histogram
* ADD paired-ttest option
* ENH add option to remove samples in GUI
* ADD pyComBat Batch correction Behdenna A, Haziza J, Azencot CA and Nordor A. (2020) pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods. bioRxiv doi: 10.1101/2020.03.17.995431
* remove iteration utilities, remove C++ dependency
* ENH upgrade to pandas 2.0.0

0.4.7

* Updated multiple packages & documentation
* Print traceback when there is an error running AlphaPept
* Updated `modifications.tsv`, Button to reload modifications via GUI
* Changed slider input widget to a number input
* Fixed links in GUI when downloading FASTA
* Fixed GUI Errors 460
* Fixed bug when launching file watcher
* Option to use relative file paths for the size check hugokitano
* New functionality to filter fragments by local rank. This should improve performance for noisy datasets.
* Cleaned up print output/deprecation & performance warnings
* Macbook crash fix by swillems in https://github.com/MannLabs/alphapept/pull/465
* FEAT: create headless option by swillems in https://github.com/MannLabs/alphapept/pull/464 #449
* Develop by straussmaximilian in https://github.com/MannLabs/alphapept/pull/478

0.4.6

* Link to Renku cmdoret
* Optimized quantification (proper integration of signal on MS1 level), now uses apex of isotope envelope
* Caching of dataframes for matching mschwoer
* Minor code reorganization
* Bugfixes in interface hugokitano
* Initial estimates for delayed normalization
* Bugfix for Threadripper Systems 434, 264
* Updated docs
* More flexibility for custom modifications

0.4.5

* FIX loading of Data on Windows

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