CVE-2021-41495

Advisory

Cashocs version 2.1.0 updates its Numpy dependency to 1.22.2 from the earlier version 1.21.3. This upgrade is in response to addressing the security vulnerability designated as CVE-2021-41495.
https://github.com/sblauth/cashocs/pull/345

Affected package

Affected versions

Fixed versions

Vulnerability changelog

What's Changed
* Bump jupytext from 1.14.5 to 1.14.6 by dependabot in https://github.com/sblauth/cashocs/pull/243
* Fix a bug when computing the transfer matrix with remeshing by sblauth in https://github.com/sblauth/cashocs/pull/244
* Add configuration file parameter [LineSearch][fail_if_not_converged] by sblauth in https://github.com/sblauth/cashocs/pull/245
* Fix for computing the global deformation function by sblauth in https://github.com/sblauth/cashocs/pull/246
* Add keyword arguments pre_callback and post_callback to optimization problems by sblauth in https://github.com/sblauth/cashocs/pull/248
* Hotfix/2.0.4 - Add preconditioner forms to topology optimization by sblauth in https://github.com/sblauth/cashocs/pull/249
* Fix an issue with the fail_if_not_converged parameter by sblauth in https://github.com/sblauth/cashocs/pull/250
* Bump actions/checkout from 3.5.2 to 3.5.3 by dependabot in https://github.com/sblauth/cashocs/pull/251
* Fix a bug in the Newton solver with MPI by sblauth in https://github.com/sblauth/cashocs/pull/252
* Fix PETSc version to <= 3.17.4 as a temporary workaround by sblauth in https://github.com/sblauth/cashocs/pull/257
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/sblauth/cashocs/pull/255
* Update from provision-with-micromamba to setup-micromamba by sblauth in https://github.com/sblauth/cashocs/pull/256
* Bump jupytext from 1.14.6 to 1.14.7 by dependabot in https://github.com/sblauth/cashocs/pull/260
* Hotfix/2.0.7 by sblauth in https://github.com/sblauth/cashocs/pull/261
* Change np.alltrue to np.all by sblauth in https://github.com/sblauth/cashocs/pull/262
* Bump myst-parser from 1.0.0 to 2.0.0 by dependabot in https://github.com/sblauth/cashocs/pull/254
* Use a different criterion for the BFGS curvature test by sblauth in https://github.com/sblauth/cashocs/pull/263
* Hotfix/2.0.8 by sblauth in https://github.com/sblauth/cashocs/pull/265
* Add configuration parameter "remesh_iter" to Section "MeshQuality" by sblauth in https://github.com/sblauth/cashocs/pull/267
* Hotfix/2.0.9 by sblauth in https://github.com/sblauth/cashocs/pull/269
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/sblauth/cashocs/pull/270
* Bump sphinx-design from 0.4.1 to 0.5.0 by dependabot in https://github.com/sblauth/cashocs/pull/273
* Bump jupytext from 1.14.7 to 1.15.0 by dependabot in https://github.com/sblauth/cashocs/pull/272
* Bump sphinx from 6.2.1 to 7.1.1 by dependabot in https://github.com/sblauth/cashocs/pull/274
* Bump docutils from 0.19 to 0.20.1 by dependabot in https://github.com/sblauth/cashocs/pull/238
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/sblauth/cashocs/pull/275
* Move to mambaorg/micromamba as docker base image for CI by sblauth in https://github.com/sblauth/cashocs/pull/276
* Add new function cashocs.io.extract_mesh_from_xdmf and corresponding CLI by sblauth in https://github.com/sblauth/cashocs/pull/277
* Fix extract_mesh_from_xdmf so that it can also be run in parallel by sblauth in https://github.com/sblauth/cashocs/pull/278
* Bump sphinx from 7.1.1 to 7.1.2 by dependabot in https://github.com/sblauth/cashocs/pull/279
* Add the option to extract more sophisticated meshes when using Gmsh by sblauth in https://github.com/sblauth/cashocs/pull/282
* Raises a warning if remeshing fails due to wrong Gmsh file by sblauth in https://github.com/sblauth/cashocs/pull/283
* Add the possibility for checkpointing by sblauth in https://github.com/sblauth/cashocs/pull/286
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/sblauth/cashocs/pull/287
* Bump sphinx from 7.1.2 to 7.2.2 by dependabot in https://github.com/sblauth/cashocs/pull/289
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/sblauth/cashocs/pull/291
* Bump sphinx from 7.2.2 to 7.2.3 by dependabot in https://github.com/sblauth/cashocs/pull/292
* Hotfix/2.0.10 by sblauth in https://github.com/sblauth/cashocs/pull/294
* Bump actions/checkout from 3.5.3 to 3.6.0 by dependabot in https://github.com/sblauth/cashocs/pull/295
* Bump sphinx from 7.2.3 to 7.2.4 by dependabot in https://github.com/sblauth/cashocs/pull/296
* Bump jupytext from 1.15.0 to 1.15.1 by dependabot in https://github.com/sblauth/cashocs/pull/297
* Bump sphinx from 7.2.4 to 7.2.5 by dependabot in https://github.com/sblauth/cashocs/pull/298
* Bump actions/checkout from 3.6.0 to 4.0.0 by dependabot in https://github.com/sblauth/cashocs/pull/300
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/sblauth/cashocs/pull/302
* Bump docker/login-action from 2 to 3 by dependabot in https://github.com/sblauth/cashocs/pull/305
* Bump docker/build-push-action from 4 to 5 by dependabot in https://github.com/sblauth/cashocs/pull/304
* Bump docker/metadata-action from 4 to 5 by dependabot in https://github.com/sblauth/cashocs/pull/303
* Hotfix/2.0.11 by sblauth in https://github.com/sblauth/cashocs/pull/309
* Bump sphinx from 7.2.5 to 7.2.6 by dependabot in https://github.com/sblauth/cashocs/pull/310
* Bump pydata-sphinx-theme from 0.13.3 to 0.14.0 by dependabot in https://github.com/sblauth/cashocs/pull/313
* Bump jupytext from 1.15.1 to 1.15.2 by dependabot in https://github.com/sblauth/cashocs/pull/312
* Add version warning banners and (more) colors to the docs by sblauth in https://github.com/sblauth/cashocs/pull/314
* Bump pydata-sphinx-theme from 0.14.0 to 0.14.1 by dependabot in https://github.com/sblauth/cashocs/pull/315
* Bump actions/checkout from 4.0.0 to 4.1.0 by dependabot in https://github.com/sblauth/cashocs/pull/317
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/sblauth/cashocs/pull/318
* FIX: Pin PETSc to <= 3.19. DOCS: Add tutorials for topology optimization problems by sblauth in https://github.com/sblauth/cashocs/pull/323
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/sblauth/cashocs/pull/319
* CI: Remove occt pin, update pins for meshio and pytest by sblauth in https://github.com/sblauth/cashocs/pull/326
* FIX: Fix the bugs in the parallel demos by sblauth in https://github.com/sblauth/cashocs/pull/329
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/sblauth/cashocs/pull/330
* Pin mpi4py to versions <= 3.1.4 by sblauth in https://github.com/sblauth/cashocs/pull/338
* Bump actions/checkout from 4.1.0 to 4.1.1 by dependabot in https://github.com/sblauth/cashocs/pull/332
* FEAT: Improve the visualization of the shape in topology optimization by sblauth in https://github.com/sblauth/cashocs/pull/339
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/sblauth/cashocs/pull/335
* FEAT: Json output is now nicer to read for humans by sblauth in https://github.com/sblauth/cashocs/pull/331
* FEAT: Adds the possibility of passing an argument to callback functions by sblauth in https://github.com/sblauth/cashocs/pull/328
* FIX: Fixes a bug where the mesh files were not written properly by sblauth in https://github.com/sblauth/cashocs/pull/340
* Bump pydata-sphinx-theme from 0.14.1 to 0.14.2 by dependabot in https://github.com/sblauth/cashocs/pull/341
* Remove the pin on mpi4py by sblauth in https://github.com/sblauth/cashocs/pull/342
* [Snyk] Fix for 4 vulnerabilities by sblauth in https://github.com/sblauth/cashocs/pull/345
* Bump pydata-sphinx-theme from 0.14.2 to 0.14.3 by dependabot in https://github.com/sblauth/cashocs/pull/347
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/sblauth/cashocs/pull/346
* Add a config file parameter "global_deformation" for the deformation by sblauth in https://github.com/sblauth/cashocs/pull/348
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/sblauth/cashocs/pull/349
* Bump pydata-sphinx-theme from 0.14.3 to 0.14.4 by dependabot in https://github.com/sblauth/cashocs/pull/352
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/sblauth/cashocs/pull/351
* Rename APosterioriTester to IntersectionTester and add a config parameter by sblauth in https://github.com/sblauth/cashocs/pull/355
* Bump jupytext from 1.15.2 to 1.16.0 by dependabot in https://github.com/sblauth/cashocs/pull/357
* Fix a bug when computing the mesh quality in parallel by sblauth in https://github.com/sblauth/cashocs/pull/360
* Bump actions/setup-python from 4 to 5 by dependabot in https://github.com/sblauth/cashocs/pull/362
* [Snyk] Security upgrade numpy from 1.21.3 to 1.22.2 by sblauth in https://github.com/sblauth/cashocs/pull/361
* CI: Improve and update GitHub actions workflows by sblauth in https://github.com/sblauth/cashocs/pull/363
* Add compatibility for ufl 2023 and ufl_legacy by sblauth in https://github.com/sblauth/cashocs/pull/364
* Fix two bugs regarding the remeshing in cashocs by sblauth in https://github.com/sblauth/cashocs/pull/365
* Fix the docs at demos/documented/misc/xdmf_io/demo_xdmf_io by sblauth in https://github.com/sblauth/cashocs/pull/366
* Add the parameter "inhomogeneous_exponent" to the Section ShapeGradient by sblauth in https://github.com/sblauth/cashocs/pull/367
* FIX: Change the way the temporary files are deleted when remeshing by sblauth in https://github.com/sblauth/cashocs/pull/368
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/sblauth/cashocs/pull/369
* Bump github/codeql-action from 2 to 3 by dependabot in https://github.com/sblauth/cashocs/pull/370
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/sblauth/cashocs/pull/371
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/sblauth/cashocs/pull/373
* [Snyk] Security upgrade fonttools from 4.38.0 to 4.43.0 by sblauth in https://github.com/sblauth/cashocs/pull/372
* Fix broken autodoc handling of docs by sblauth in https://github.com/sblauth/cashocs/pull/374
* Bump pydata-sphinx-theme from 0.14.4 to 0.15.1 by dependabot in https://github.com/sblauth/cashocs/pull/375
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/sblauth/cashocs/pull/376
* Bump jupytext from 1.16.0 to 1.16.1 by dependabot in https://github.com/sblauth/cashocs/pull/378
* Bump pydata-sphinx-theme from 0.15.1 to 0.15.2 by dependabot in https://github.com/sblauth/cashocs/pull/379
* FEAT: Add the kwargs `linear_solver` and `adjoint_linear_solver` by sblauth in https://github.com/sblauth/cashocs/pull/380
* Bump nowsprinting/check-version-format-action from 3 to 4 by dependabot in https://github.com/sblauth/cashocs/pull/382
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/sblauth/cashocs/pull/381
* Bump meshio from 5.3.4 to 5.3.5 by dependabot in https://github.com/sblauth/cashocs/pull/383
* Hotfix/2.0.14 by sblauth in https://github.com/sblauth/cashocs/pull/386
* Prevent upload to codacy action blocking PRs from forks by sblauth in https://github.com/sblauth/cashocs/pull/387
* Add the kwarg `newton_linearization` to the optimization problems by sblauth in https://github.com/sblauth/cashocs/pull/390
* Add the possibility to specify the preconditioner form as bilinear form in Newton's method by sblauth in https://github.com/sblauth/cashocs/pull/392
* ENH: Newton's method now uses the user-specified relative tolerance by sblauth in https://github.com/sblauth/cashocs/pull/393


**Full Changelog**: https://github.com/sblauth/cashocs/compare/v2.0.14...v2.1.0

Resources

• https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2021-41495