Safety CI > msk-access/uncollapsed_bam

develop

1 month, 1 week ago

d1f2f1ad

Merge branch 'release/1.3.2' into develop

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refs/tags/1.3.2

1 month, 1 week ago

480387b1

Merge branch 'release/1.3.2'

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release/1.3.2

1 month, 1 week ago

1f35adb0

Upadating commandlinetools to 1.3.6 and subworkflows to 1.2.8

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master

3 months, 1 week ago

ebbe7bdc

Merge branch 'release/1.3.1'

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develop

3 months, 1 week ago

f7433295

Merge branch 'release/1.3.1' into develop

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release/1.3.1

3 months, 1 week ago

c4abf53d

Update requirements.txt

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release/1.3.1

3 months, 1 week ago

9cce7de6

Update versions and example yaml

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develop

3 months, 1 week ago

2e2f64ce

Merge pull request #59 from msk-access/feature/use_static_bed_file_for_ABRA Feature/use static bed

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feature/use_static_bed_file_for_ABRA

3 months, 1 week ago

dc91e86c

Update subworkflows

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feature/use_static_bed_file_for_ABRA

3 months, 1 week ago

2e63782a

Update subworkflows

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feature/use_static_bed_file_for_ABRA

3 months, 1 week ago

068064f2

Update to specific version of submodules subworkflows v1.2.7 commandlinetools v1.3.5

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feature/use_static_bed_file_for_ABRA

3 months, 1 week ago

6822bc63

Update subworkflows

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pyup-scheduled-update-2024-12-01

5 months ago

eb438147

Update tox from 3.27.1 to 4.23.2

pytest-runner 6.0.1 has known security vulnerabilities.

Package	Installed	Affected	Info
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

Package

Installed

Affected

Info

pytest-runner

6.0.1

>0

show

Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684.
It is recommended that you:
- Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option.
- Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option.
- Select a tool to bootstrap and then run tests such as tox.
https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

pyup-scheduled-update-2024-12-01

5 months ago

6254ecea

Update toil from 5.10.0 to 7.0.0

pytest-runner 6.0.1 has known security vulnerabilities.

Package	Installed	Affected	Info
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

Package

Installed

Affected

Info

pytest-runner

6.0.1

>0

show

Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684.
It is recommended that you:
- Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option.
- Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option.
- Select a tool to bootstrap and then run tests such as tox.
https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

pyup-scheduled-update-2024-12-01

5 months ago

be3443e0

Update setuptools from 65.4.1 to 75.6.0

pytest-runner 6.0.1 has known security vulnerabilities.

Package	Installed	Affected	Info
pytest-runner	6.0.1	>0	show Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684. It is recommended that you: - Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option. - Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option. - Select a tool to bootstrap and then run tests such as tox. https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

Package

Installed

Affected

Info

pytest-runner

6.0.1

>0

show

Pytest-runner depends on deprecated features of setuptools and relies on features that break security mechanisms in pip. For example ‘setup_requires’ and ‘tests_require’ bypass pip --require-hashes. See also pypa/setuptools#1684.
It is recommended that you:
- Remove 'pytest-runner' from your setup_requires, preferably removing the setup_requires option.
- Remove 'pytest' and any other testing requirements from tests_require, preferably removing the tests_requires option.
- Select a tool to bootstrap and then run tests such as tox.
https://github.com/pytest-dev/pytest-runner/blob/289a77b179535d8137118e3b8591d9e727130d6d/README.rst

msk-access/uncollapsed_bam_generation